Hs05759577_cn

• Gene Symbol: SPRTN
• Assay Reference Genome Location: Chr.1:231343873 on build GRCh38
• Cytoband: 1q42.2

Target Gene Details

• Entrez Gene ID: 83932
• Gene Name: SprT-like N-terminal domain
• Gene Aliases: C1orf124, DVC1, PRO4323, spartan
• Location: Chr.1:231337936-231355029 on Build GRCh38
• Assay Gene Location: Within Intron 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
SPRTN	NM_001010984.3			NP_001010984.1
	NM_001261462.2			NP_001248391.1
	NM_032018.6			NP_114407.3
	XM_006711818.2			XP_006711881.1
	AK027317.1			BAB55037.1
	AK027613.1			BAB55232.1
	AL512744.1			CAC21670.1
	AY358611.1			AAQ88974.1
	BC015740.1			AAH15740.1
	BC068478.1			AAH68478.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
esv3589109	Chr.1:231343890 - 231346486 on Build GRCh38	Loss	SPRTN

More Information

Additional Information:

For this assay, SNP(s) [rs201145559] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

cellular response to DNA damage stimulus
response to UV
translesion synthesis
positive regulation of protein ubiquitination
error-free translesion synthesis

Function(s)

DNA binding
protein binding
ubiquitin binding
metal ion binding
K63-linked polyubiquitin binding