Hs06118038_cn

• Gene Symbol: AFF4
• Assay Reference Genome Location: Chr.5:132958797 on build GRCh38
• Cytoband: 5q31.1

Target Gene Details

• Entrez Gene ID: 27125
• Gene Name: AF4/FMR2 family member 4
• Gene Aliases: AF5Q31, CHOPS, MCEF
• Location: Chr.5:132875379-132963662 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
AFF4	NM_014423.3			NP_055238.1
	XM_005271963.4			XP_005272020.1
	XM_006714587.3			XP_006714650.1
	AB209547.1			BAD92784.1
	AF197927.1			AAF18981.1
	AF213987.2			AAM00184.2
	AK055638.1
	AK307407.1
	BC025700.1			AAH25700.1
	BC063007.1			AAH63007.1
	BC100287.1			AAI00288.1
	BC137226.1
	DA934874.1

Target Gene Details

• Entrez Gene ID: 105379177
• Gene Name: uncharacterized LOC105379177
• Gene Aliases: -
• Location: Chr.5:132958461-132961580 on Build GRCh38
• Assay Gene Location: Within Exon 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
LOC105379177	XM_011543785.2	1	2784	XP_011542087.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv830490	Chr.5:132953258 - 133115177 on Build GRCh38	Gain	HSPA4 AFF4 ZCCHC10 LOC105379178 LOC105379177
nsv830489	Chr.5:132815845 - 133000744 on Build GRCh38	Loss	AFF4 LEAP2 UQCRQ ZCCHC10 SOWAHA GDF9 SHROOM1 LOC107984115 LOC105379177
nsv1022039	Chr.5:132914933 - 133045063 on Build GRCh38	Gain	AFF4 ZCCHC10 LOC105379177

More Information

• Set Membership: Intragenic, Exonic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

DNA-binding transcription factor

Gene Ontology Categories:

Process(es)

regulation of transcription, DNA-templated
transcription from RNA polymerase II promoter
spermatid development

Function(s)

transcription factor activity, sequence-specific DNA binding
protein binding