Hs06443668_cn

• Gene Symbol: CTDP1
• Assay Reference Genome Location: Chr.18:79714117 on build GRCh38
• Cytoband: 18q23

Target Gene Details

• Entrez Gene ID: 9150
• Gene Name: CTD phosphatase subunit 1
• Gene Aliases: CCFDN, FCP1
• Location: Chr.18:79679801-79754510 on Build GRCh38
• Assay Gene Location: Within Intron 9

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
CTDP1	NM_001202504.1			NP_001189433.1
	NM_001318511.1			NP_001305440.1
	NM_004715.4			NP_004706.3
	NM_048368.3			NP_430255.2
	XM_011526261.1			XP_011524563.1
	XM_017026078.1			XP_016881567.1
	AF081287.1			AAC64549.1
	AF154115.1			AAD42088.1
	BC015010.1			AAH15010.1
	BC052576.1			AAH52576.1
	BC063447.1			AAH63447.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv509709	Chr.18:79685368 - 79838375 on Build GRCh38	Insertion	CTDP1 KCNG2 LOC105376875
nsv428359	Chr.18:79277548 - 80255221 on Build GRCh38	Gain	RBFA CTDP1 KCNG2 PARD6G NFATC1 LOC284240 LOC107985149 LOC284241 PARD6G-AS1 RBFADN ADNP2 PQLC1 HSBP1L1 TXNL4A ATP9B LOC105376875
nsv525694	Chr.18:79395184 - 79961125 on Build GRCh38	Loss	CTDP1 KCNG2 NFATC1 LOC284240 PQLC1 LOC284241 LOC105376875
nsv1065902	Chr.18:78538045 - 80257174 on Build GRCh38	Gain	RBFA CTDP1 KCNG2 PARD6G NFATC1 LOC284240 LOC100996274 LOC107985149 SALL3 LOC284241 PARD6G-AS1 RBFADN ADNP2 PQLC1 HSBP1L1 TXNL4A ATP9B LOC105376875
nsv519406	Chr.18:79630343 - 79897319 on Build GRCh38	Gain	CTDP1 KCNG2 LOC284241 LOC105376875
nsv470437	Chr.18:79657934 - 80103778 on Build GRCh38	Loss	RBFA CTDP1 KCNG2 RBFADN PQLC1 HSBP1L1 LOC284241 TXNL4A LOC105376875
nsv1064506	Chr.18:79580427 - 79773771 on Build GRCh38	Gain	CTDP1 LOC284240 LOC284241 LOC105376875
nsv1061450	Chr.18:79703531 - 80135801 on Build GRCh38	Gain	RBFA CTDP1 KCNG2 RBFADN ADNP2 PQLC1 HSBP1L1 TXNL4A
nsv1066888	Chr.18:79643023 - 79769924 on Build GRCh38	Gain	CTDP1 LOC284241 LOC105376875

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

protein phosphatase

Gene Ontology Categories:

Process(es)

transcription from RNA polymerase II promoter
transcription elongation from RNA polymerase II promoter
protein dephosphorylation
exit from mitosis
positive regulation of viral transcription
cell division
negative regulation of cell growth involved in cardiac muscle cell development
dephosphorylation of RNA polymerase II C-terminal domain

Function(s)

phosphoprotein phosphatase activity
protein binding
CTD phosphatase activity