Hs06494486_cn

• Gene Symbol: CTDP1
• Assay Reference Genome Location: Chr.18:79708369 on build GRCh38
• Cytoband: 18q23

Target Gene Details

• Entrez Gene ID: 9150
• Gene Name: CTD phosphatase subunit 1
• Gene Aliases: CCFDN, FCP1
• Location: Chr.18:79679801-79754510 on Build GRCh38
• Assay Gene Location: Within Intron 7

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
CTDP1	NM_001202504.1			NP_001189433.1
	NM_001318511.1			NP_001305440.1
	NM_004715.4			NP_004706.3
	NM_048368.3			NP_430255.2
	XM_011526261.1			XP_011524563.1
	XM_017026078.1			XP_016881567.1
	AF081287.1			AAC64549.1
	AF154115.1			AAD42088.1
	BC052576.1			AAH52576.1
	BC063447.1			AAH63447.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv509709	Chr.18:79685368 - 79838375 on Build GRCh38	Insertion	LOC105376875 KCNG2 CTDP1
nsv428359	Chr.18:79277548 - 80255221 on Build GRCh38	Gain	PQLC1 RBFADN PARD6G-AS1 LOC107985149 LOC105376875 TXNL4A ADNP2 LOC284241 NFATC1 PARD6G ATP9B LOC284240 RBFA KCNG2 CTDP1 HSBP1L1
esv3643315	Chr.18:79704447 - 79712227 on Build GRCh38	Gain	CTDP1
nsv525694	Chr.18:79395184 - 79961125 on Build GRCh38	Loss	LOC284240 PQLC1 LOC105376875 KCNG2 CTDP1 LOC284241 NFATC1
nsv1065902	Chr.18:78538045 - 80257174 on Build GRCh38	Gain	PQLC1 RBFADN PARD6G-AS1 LOC107985149 LOC105376875 TXNL4A ADNP2 LOC284241 NFATC1 SALL3 PARD6G ATP9B LOC284240 LOC100996274 RBFA KCNG2 CTDP1 HSBP1L1
nsv519406	Chr.18:79630343 - 79897319 on Build GRCh38	Gain	LOC105376875 KCNG2 CTDP1 LOC284241
nsv470437	Chr.18:79657934 - 80103778 on Build GRCh38	Loss	PQLC1 RBFADN RBFA LOC105376875 TXNL4A KCNG2 CTDP1 HSBP1L1 LOC284241
nsv1064506	Chr.18:79580427 - 79773771 on Build GRCh38	Gain	LOC284240 LOC105376875 CTDP1 LOC284241
nsv1061450	Chr.18:79703531 - 80135801 on Build GRCh38	Gain	PQLC1 RBFADN RBFA TXNL4A KCNG2 ADNP2 CTDP1 HSBP1L1
nsv1066888	Chr.18:79643023 - 79769924 on Build GRCh38	Gain	LOC105376875 CTDP1 LOC284241

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

protein phosphatase

Gene Ontology Categories:

Process(es)

transcription from RNA polymerase II promoter
transcription elongation from RNA polymerase II promoter
protein dephosphorylation
exit from mitosis
positive regulation of viral transcription
cell division
negative regulation of cell growth involved in cardiac muscle cell development
dephosphorylation of RNA polymerase II C-terminal domain

Function(s)

phosphoprotein phosphatase activity
protein binding
CTD phosphatase activity