Hs07537227_cn

• Gene Symbol: GATA1
• Assay Reference Genome Location: Chr.X:48787332 on build GRCh38
• Cytoband: Xp11.23

Target Gene Details

• Entrez Gene ID: 2623
• Gene Name: GATA binding protein 1
• Gene Aliases: ERYF1, GATA-1, GF-1, GF1, NF-E1, NFE1, XLANP, XLTDA, XLTT
• Location: Chr.X:48786540-48794311 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
GATA1	NM_002049.3			NP_002040.1
	XM_011543897.2			XP_011542199.1
	XM_011543898.2			XP_011542200.1
	BC009797.1			AAH09797.1
	M30601.1			AAA35885.1
	X17254.1			CAA35120.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
esv28934	Chr.X:48786823 - 48787648 on Build GRCh38	Gain	GATA1
nsv528292	Chr.X:48433286 - 49274368 on Build GRCh38	Gain	PIM2 PORCN HDAC6 TIMM17B ERAS GLOD5 PCSK1N MAGIX FTSJ1 RBM3 SLC38A5 PRAF2 CACNA1F OTUD5 TFE3 PPP1R3F GRIPAP1 LOC101927635 SUV39H1 KCND1 PRICKLE3 GPKOW SYP WDR13 TBC1D25 CCDC120 EBP SYP-AS1 WAS FOXP3 SLC35A2 CCDC22 WDR45 GATA1 PQBP1 PLP2
esv3576862	Chr.X:48755018 - 48837713 on Build GRCh38	Gain	HDAC6 ERAS GLOD5 PCSK1N GATA1
esv32909	Chr.X:48003374 - 49285646 on Build GRCh38	Gain+Loss	PIM2 ZNF630-AS1 PORCN HDAC6 TIMM17B ERAS GLOD5 PCSK1N SSX3 MAGIX FTSJ1 SSX4B RBM3 SLC38A5 PRAF2 CACNA1F SPACA5 ZNF182 OTUD5 TFE3 PPP1R3F GRIPAP1 SSX9 LOC101927635 SUV39H1 SSX6 KCND1 PRICKLE3 GPKOW SYP SSX5 SSX4 WDR13 TBC1D25 SSX1 SPACA5B CCDC120 EBP SYP-AS1 WAS FOXP3 SLC35A2 CCDC22 ZNF630 WDR45 GATA1 PQBP1 PLP2
nsv6893	Chr.X:48778273 - 48810147 on Build GRCh38	Insertion	HDAC6 GATA1

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

DNA-binding transcription factor

Gene Ontology Categories:

Process(es)

negative regulation of transcription from RNA polymerase II promoter
in utero embryonic development
transcription from RNA polymerase II promoter
cell-cell signaling
heart development
blood coagulation
negative regulation of cell proliferation
male gonad development
organ morphogenesis
tissue development
regulation of glycoprotein biosynthetic process
regulation of definitive erythrocyte differentiation
regulation of primitive erythrocyte differentiation
erythrocyte differentiation
megakaryocyte differentiation
platelet formation
basophil differentiation
eosinophil differentiation
negative regulation of bone mineralization
positive regulation of osteoblast proliferation
embryonic hemopoiesis
eosinophil fate commitment
negative regulation of apoptotic process
positive regulation of erythrocyte differentiation
positive regulation of transcription, DNA-templated
positive regulation of transcription from RNA polymerase II promoter
digestive tract development
erythrocyte development
homeostasis of number of cells within a tissue
positive regulation of peptidyl-tyrosine phosphorylation
platelet aggregation
transcriptional activation by promoter-enhancer looping
dendritic cell differentiation
cellular response to thyroid hormone stimulus
negative regulation of transcription regulatory region DNA binding
negative regulation of extrinsic apoptotic signaling pathway in absence of ligand

Function(s)

transcription regulatory region sequence-specific DNA binding
RNA polymerase II regulatory region sequence-specific DNA binding
RNA polymerase II core promoter proximal region sequence-specific DNA binding
RNA polymerase II core promoter sequence-specific DNA binding
core promoter binding
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding
RNA polymerase II transcription factor binding
enhancer sequence-specific DNA binding
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
p53 binding
DNA binding
transcription factor activity, sequence-specific DNA binding
protein binding
zinc ion binding
DNA binding, bending
chromatin DNA binding
sequence-specific DNA binding
C2H2 zinc finger domain binding