Hs07537230_cn

• Gene Symbol: GATA1
• Assay Reference Genome Location: Chr.X:48787449 on build GRCh38
• Cytoband: Xp11.23

Target Gene Details

• Entrez Gene ID: 2623
• Gene Name: GATA binding protein 1
• Gene Aliases: ERYF1, GATA-1, GF-1, GF1, NF-E1, NFE1, XLANP, XLTDA, XLTT
• Location: Chr.X:48786540-48794311 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
GATA1	NM_002049.3			NP_002040.1
	XM_011543897.2			XP_011542199.1
	XM_011543898.2			XP_011542200.1
	BC009797.1			AAH09797.1
	M30601.1			AAA35885.1
	X17254.1			CAA35120.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
esv28934	Chr.X:48786823 - 48787648 on Build GRCh38	Gain	GATA1
nsv528292	Chr.X:48433286 - 49274368 on Build GRCh38	Gain	WDR13 SYP SYP-AS1 PIM2 TFE3 WDR45 GRIPAP1 PQBP1 KCND1 ERAS CCDC120 SLC38A5 RBM3 CCDC22 GPKOW FOXP3 PRICKLE3 TIMM17B EBP SUV39H1 FTSJ1 PLP2 SLC35A2 HDAC6 PPP1R3F PCSK1N PRAF2 GATA1 MAGIX GLOD5 WAS OTUD5 CACNA1F TBC1D25 PORCN LOC101927635
esv3576862	Chr.X:48755018 - 48837713 on Build GRCh38	Gain	GLOD5 HDAC6 PCSK1N ERAS GATA1
esv32909	Chr.X:48003374 - 49285646 on Build GRCh38	Gain+Loss	WDR13 SYP SYP-AS1 SPACA5 PIM2 TFE3 WDR45 GRIPAP1 PQBP1 KCND1 ERAS CCDC120 SSX4B SSX6 SLC38A5 RBM3 CCDC22 SSX4 GPKOW FOXP3 PRICKLE3 TIMM17B ZNF182 EBP SUV39H1 FTSJ1 SPACA5B PLP2 SLC35A2 HDAC6 ZNF630-AS1 PPP1R3F PCSK1N PRAF2 GATA1 MAGIX SSX9 SSX3 ZNF630 GLOD5 WAS SSX5 OTUD5 SSX1 CACNA1F TBC1D25 PORCN LOC101927635
nsv6893	Chr.X:48778273 - 48810147 on Build GRCh38	Insertion	HDAC6 GATA1

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

DNA-binding transcription factor

Gene Ontology Categories:

Process(es)

negative regulation of transcription from RNA polymerase II promoter
in utero embryonic development
transcription from RNA polymerase II promoter
cell-cell signaling
heart development
blood coagulation
negative regulation of cell proliferation
male gonad development
organ morphogenesis
tissue development
regulation of glycoprotein biosynthetic process
regulation of definitive erythrocyte differentiation
regulation of primitive erythrocyte differentiation
erythrocyte differentiation
megakaryocyte differentiation
platelet formation
basophil differentiation
eosinophil differentiation
negative regulation of bone mineralization
positive regulation of osteoblast proliferation
embryonic hemopoiesis
eosinophil fate commitment
negative regulation of apoptotic process
positive regulation of erythrocyte differentiation
positive regulation of transcription, DNA-templated
positive regulation of transcription from RNA polymerase II promoter
digestive tract development
erythrocyte development
homeostasis of number of cells within a tissue
positive regulation of peptidyl-tyrosine phosphorylation
platelet aggregation
transcriptional activation by promoter-enhancer looping
dendritic cell differentiation
cellular response to thyroid hormone stimulus
negative regulation of transcription regulatory region DNA binding
negative regulation of extrinsic apoptotic signaling pathway in absence of ligand

Function(s)

transcription regulatory region sequence-specific DNA binding
RNA polymerase II regulatory region sequence-specific DNA binding
RNA polymerase II core promoter proximal region sequence-specific DNA binding
RNA polymerase II core promoter sequence-specific DNA binding
core promoter binding
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding
RNA polymerase II transcription factor binding
enhancer sequence-specific DNA binding
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
p53 binding
DNA binding
transcription factor activity, sequence-specific DNA binding
protein binding
zinc ion binding
DNA binding, bending
chromatin DNA binding
sequence-specific DNA binding
C2H2 zinc finger domain binding