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See other SAMD11 CNV Assays ›
Gene Symbol
SAMD11
Assay Reference Genome
Location

Chr.1:931062 on build GRCh38
Cytoband
1p36.33
Assay ID Hs00626804_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 148398

Gene Name:

 sterile alpha motif domain containing 11

Gene Aliases:

 MRS

Location:

 Chr.1:925741-944581 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 3 - Intron 4
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SAMD11 NM_152486.2 NP_689699.2
CN293867.1
CN342795.1
JX093066.1
JX093067.1
JX093068.1
JX093069.1
JX093070.1
JX093071.1
JX093072.1
JX093073.1
JX093074.1
JX093075.1
JX093076.1
JX093077.1
JX093078.1
JX093079.1
JX093080.1
JX093081.1
JX093082.1
JX093083.1
JX093084.1
JX093085.1
JX093086.1
JX093087.1
JX093088.1
JX093089.1
JX093090.1
JX093091.1
JX093092.1
JX093093.1
JX093094.1
JX093095.1
JX093096.1
JX093097.1
JX093098.1
JX093099.1
JX093100.1
JX093101.1
JX093102.1
JX093103.1
JX093104.1
JX093105.1
JX093106.1
JX093107.1
JX093108.1
JX093109.1
JX093110.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2762302 Chr.1:914637 - 1106320 on Build GRCh38 Gain LOC100130417 LOC107985728 SAMD11 C1orf159 LOC100288175 PLEKHN1 ISG15 NOC2L LOC284600 HES4 AGRN KLHL17 PERM1 RNF223 LOC105378948
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss MRPL20 LOC105378591 SKI LOC101928626 LOC100133331 TNFRSF18 ISG15 ATAD3B TNFRSF4 PERM1 LOC105378948 LOC102724312 SDF4 FAM41C FNDC10 LOC100288175 TMEM52 OR4F16 LOC107984841 MTND2P28 CDK11A LOC100134822 LOC105378949 ACAP3 CCNL2 LOC148413 LOC100287934 C1orf159 GNB1 NOC2L HES4 PRKCZ LOC105378592 AGRN ANKRD65 VWA1 TMEM240 GABRD LINC01128 LOC105378589 MMP23A LOC729737 KLHL17 LOC105378947 LOC107985729 MIR6859-1 LOC100129534 LOC100130417 CALML6 SSU72 FAM87B DDX11L1 LOC102725121 B3GALT6 MIB2 CPSF3L OR4F29 RNF223 MIR6808 FAM132A MIR200A FAAP20 PUSL1 SCNN1D ATAD3C MIR1302-2 FAM138A LOC284600 TTLL10-AS1 CFAP74 SLC35E2 MXRA8 AURKAIP1 MIR200B DVL1 CDK11B CPTP LOC107985728 LINC00115 TAS1R3 OR4F5 SAMD11 UBE2J2 MIR429 ATAD3A MIR6723 SLC35E2B MMP23B LOC100288069 LOC100506504 NADK MORN1 MIR6726 TTLL10 PLEKHN1 MIR6727 WASH7P LOC100132287 TMEM88B MTND1P23 LINC01342 MIR6859-2
dgv10n54 Chr.1:929558 - 935265 on Build GRCh38 Gain+Loss SAMD11
nsv950451 Chr.1:899421 - 1094520 on Build GRCh38 Deletion LOC100130417 LOC107985728 SAMD11 C1orf159 LOC100288175 PLEKHN1 ISG15 NOC2L LOC284600 HES4 AGRN KLHL17 PERM1 RNF223 LOC105378948
nsv509035 Chr.1:891406 - 985724 on Build GRCh38 Insertion NOC2L LOC284600 LOC100130417 LOC107985728 KLHL17 PERM1 SAMD11 PLEKHN1
dgv8n54 Chr.1:925754 - 943937 on Build GRCh38 Loss SAMD11
nsv428334 Chr.1:874371 - 1220569 on Build GRCh38 Gain LOC100130417 LOC107985728 SAMD11 C1orf159 TNFRSF18 ISG15 NOC2L MIR429 HES4 AGRN TNFRSF4 PERM1 RNF223 LOC105378948 SDF4 MIR200A TTLL10 FAM41C LOC100288175 PLEKHN1 LOC284600 TTLL10-AS1 KLHL17 LINC01342 MIR200B
dgv5n100 Chr.1:585989 - 1114424 on Build GRCh38 Gain LOC100130417 FAM87B LOC107985728 LINC00115 LOC101928626 SAMD11 LOC100133331 LOC100287934 C1orf159 ISG15 NOC2L HES4 AGRN MIR6723 PERM1 RNF223 LOC105378948 LOC100288069 FAM41C LOC100288175 OR4F16 PLEKHN1 LINC01128 LOC107984841 LOC284600 MTND2P28 KLHL17 MTND1P23 LOC105378947
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss MRPL20 LOC100130417 SSU72 FAM87B B3GALT6 TNFRSF18 ISG15 MIB2 CPSF3L ATAD3B TNFRSF4 PERM1 RNF223 LOC105378948 MIR6808 LOC102724312 FAM132A SDF4 MIR200A FAM41C FNDC10 PUSL1 SCNN1D ATAD3C LOC100288175 LOC284600 TTLL10-AS1 SLC35E2 CDK11A MXRA8 AURKAIP1 MIR200B ACAP3 DVL1 CCNL2 CDK11B CPTP LOC148413 LOC107985728 LINC00115 TAS1R3 SAMD11 LOC100287934 C1orf159 NOC2L UBE2J2 MIR429 HES4 ATAD3A AGRN SLC35E2B MMP23B LOC100288069 NADK ANKRD65 MIR6726 VWA1 TTLL10 TMEM240 PLEKHN1 LINC01128 MIR6727 MMP23A TMEM88B KLHL17 LOC107985729 LINC01342
dgv1n111 Chr.1:690090 - 939522 on Build GRCh38 Duplication LOC100130417 FAM41C FAM87B LOC107985728 LINC00115 SAMD11 LOC100133331 LOC100287934 OR4F16 LINC01128 LOC107984841 LOC284600 LOC100288069
nsv517709 Chr.1:817186 - 1275912 on Build GRCh38 Gain+Loss LOC100130417 FAM87B LOC107985728 LINC00115 B3GALT6 SAMD11 C1orf159 TNFRSF18 ISG15 NOC2L UBE2J2 MIR429 HES4 AGRN TNFRSF4 PERM1 RNF223 LOC105378948 FAM132A SDF4 MIR200A TTLL10 FAM41C LOC100288175 PLEKHN1 LINC01128 LOC284600 TTLL10-AS1 KLHL17 LINC01342 MIR200B
dgv3n111 Chr.1:783283 - 939522 on Build GRCh38 Duplication LOC284600 LOC100130417 FAM41C FAM87B LOC107985728 LINC00115 SAMD11 LOC100287934 LINC01128
dgv2n67 Chr.1:877618 - 1426500 on Build GRCh38 Gain MRPL20 ACAP3 LOC100130417 DVL1 CCNL2 CPTP LOC148413 LOC107985728 TAS1R3 B3GALT6 SAMD11 C1orf159 TNFRSF18 ISG15 NOC2L UBE2J2 MIR429 HES4 CPSF3L AGRN TNFRSF4 PERM1 RNF223 LOC105378948 MIR6808 ANKRD65 FAM132A MIR6726 SDF4 MIR200A TTLL10 PUSL1 SCNN1D LOC100288175 PLEKHN1 MIR6727 LOC284600 TTLL10-AS1 TMEM88B KLHL17 MXRA8 AURKAIP1 LINC01342 MIR200B
nsv544895 Chr.1:917392 - 1054900 on Build GRCh38 Loss ISG15 NOC2L LOC284600 LOC100130417 HES4 AGRN LOC107985728 KLHL17 PERM1 SAMD11 PLEKHN1
nsv832980 Chr.1:848279 - 1007037 on Build GRCh38 Gain NOC2L LOC284600 LOC100130417 HES4 FAM41C LOC107985728 KLHL17 PERM1 SAMD11 PLEKHN1 LINC01128
nsv544897 Chr.1:924665 - 934930 on Build GRCh38 Gain+Loss LOC107985728 SAMD11

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More Information


Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:


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