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See other SAMD11 CNV Assays ›
Gene Symbol
SAMD11
Assay Reference Genome
Location

Chr.1:925973 on build GRCh38
Cytoband
1p36.33
Assay ID Hs01186397_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 148398

Gene Name:

 sterile alpha motif domain containing 11

Gene Aliases:

 MRS

Location:

 Chr.1:925741-944581 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 1 - Intron 2
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SAMD11 NM_152486.2 NP_689699.2
CN342795.1
JX093066.1
JX093067.1
JX093068.1
JX093069.1
JX093070.1
JX093071.1
JX093072.1
JX093073.1
JX093074.1
JX093075.1
JX093076.1
JX093077.1
JX093078.1
JX093079.1
JX093080.1
JX093081.1
JX093082.1
JX093083.1
JX093084.1
JX093085.1
JX093086.1
JX093087.1
JX093088.1
JX093089.1
JX093090.1
JX093091.1
JX093092.1
JX093093.1
JX093094.1
JX093095.1
JX093096.1
JX093097.1
JX093098.1
JX093099.1
JX093100.1
JX093101.1
JX093102.1
JX093103.1
JX093104.1
JX093105.1
JX093106.1
JX093107.1
JX093108.1
JX093109.1
JX093110.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2762302 Chr.1:914637 - 1106320 on Build GRCh38 Gain LOC107985728 HES4 C1orf159 PLEKHN1 SAMD11 LOC284600 LOC105378948 PERM1 KLHL17 LOC100288175 LOC100130417 RNF223 AGRN ISG15 NOC2L
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss B3GALT6 UBE2J2 LOC107984841 PLEKHN1 LOC284600 LOC105378948 MIR6859-2 WASH7P SKI MORN1 TNFRSF18 AURKAIP1 PRKCZ LOC105378591 SSU72 MIR6808 DDX11L1 TAS1R3 FAM138A MIR6726 LOC148413 CPSF3L OR4F16 MMP23B NADK MTND2P28 SAMD11 LOC105378947 FAM41C ATAD3A PERM1 TMEM52 LOC107985729 TMEM88B MRPL20 ISG15 MIR200B HES4 C1orf159 MIR6723 SDF4 CPTP FAM132A KLHL17 FAM87B MIB2 MMP23A OR4F29 LINC01342 LOC100132287 AGRN NOC2L MIR1302-2 ATAD3B MXRA8 ACAP3 PUSL1 LOC100288175 LOC100130417 CCNL2 TTLL10 MIR6727 LOC107985728 LOC105378949 MIR429 LOC100288069 TMEM240 ANKRD65 LOC102725121 VWA1 LOC100506504 FAAP20 GABRD LOC100133331 RNF223 LINC01128 CFAP74 LOC102724312 LOC105378592 LINC00115 CDK11A MTND1P23 LOC101928626 CDK11B TNFRSF4 OR4F5 LOC729737 MIR6859-1 GNB1 SCNN1D LOC100134822 SLC35E2B TTLL10-AS1 LOC100287934 MIR200A CALML6 LOC105378589 ATAD3C LOC100129534 FNDC10 DVL1 SLC35E2
nsv950451 Chr.1:899421 - 1094520 on Build GRCh38 Deletion LOC107985728 HES4 C1orf159 PLEKHN1 SAMD11 LOC284600 LOC105378948 PERM1 KLHL17 LOC100288175 LOC100130417 RNF223 AGRN ISG15 NOC2L
nsv509035 Chr.1:891406 - 985724 on Build GRCh38 Insertion PERM1 LOC107985728 KLHL17 PLEKHN1 SAMD11 LOC100130417 LOC284600 NOC2L
dgv8n54 Chr.1:925754 - 943937 on Build GRCh38 Loss SAMD11
nsv428334 Chr.1:874371 - 1220569 on Build GRCh38 Gain PLEKHN1 SAMD11 FAM41C LOC284600 LOC105378948 PERM1 TNFRSF4 TNFRSF18 LOC100288175 LOC100130417 ISG15 MIR200B TTLL10 LOC107985728 HES4 MIR429 C1orf159 TTLL10-AS1 SDF4 MIR200A KLHL17 LINC01342 RNF223 AGRN NOC2L
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss B3GALT6 UBE2J2 PLEKHN1 LOC284600 LOC105378948 ATAD3B MXRA8 ACAP3 TNFRSF18 AURKAIP1 PUSL1 LOC100288175 LOC100130417 CCNL2 TTLL10 MIR6727 LOC107985728 MIR429 LOC100288069 TMEM240 SSU72 MIR6808 ANKRD65 VWA1 TAS1R3 MIR6726 RNF223 LINC01128 LOC148413 CPSF3L MMP23B NADK LOC102724312 LINC00115 SAMD11 CDK11A FAM41C ATAD3A PERM1 CDK11B LOC107985729 TMEM88B TNFRSF4 MRPL20 ISG15 MIR200B HES4 SCNN1D C1orf159 SLC35E2B TTLL10-AS1 LOC100287934 SDF4 CPTP MIR200A ATAD3C FAM132A KLHL17 FAM87B MIB2 MMP23A FNDC10 DVL1 LINC01342 AGRN SLC35E2 NOC2L
dgv5n100 Chr.1:585989 - 1114424 on Build GRCh38 Gain MTND2P28 LINC00115 LOC107984841 PLEKHN1 SAMD11 LOC105378947 FAM41C MTND1P23 LOC284600 LOC105378948 LOC101928626 PERM1 LOC100288175 LOC100130417 ISG15 LOC107985728 HES4 C1orf159 LOC100288069 MIR6723 LOC100287934 KLHL17 FAM87B LOC100133331 RNF223 AGRN LINC01128 NOC2L OR4F16
nsv517709 Chr.1:817186 - 1275912 on Build GRCh38 Gain+Loss B3GALT6 LINC00115 UBE2J2 PLEKHN1 SAMD11 FAM41C LOC284600 LOC105378948 PERM1 TNFRSF4 TNFRSF18 LOC100288175 LOC100130417 ISG15 MIR200B TTLL10 LOC107985728 HES4 MIR429 C1orf159 TTLL10-AS1 SDF4 MIR200A FAM132A KLHL17 FAM87B LINC01342 RNF223 AGRN LINC01128 NOC2L
dgv1n111 Chr.1:690090 - 939522 on Build GRCh38 Duplication LOC107985728 LINC00115 LOC100288069 LOC107984841 SAMD11 FAM41C LOC284600 LOC100287934 FAM87B LOC100130417 LOC100133331 LINC01128 OR4F16
dgv3n111 Chr.1:783283 - 939522 on Build GRCh38 Duplication LOC107985728 FAM87B LINC00115 SAMD11 FAM41C LOC100130417 LINC01128 LOC284600 LOC100287934
dgv2n67 Chr.1:877618 - 1426500 on Build GRCh38 Gain B3GALT6 UBE2J2 PLEKHN1 SAMD11 LOC284600 LOC105378948 MXRA8 PERM1 ACAP3 TMEM88B TNFRSF4 TNFRSF18 AURKAIP1 PUSL1 LOC100288175 LOC100130417 MRPL20 ISG15 MIR200B CCNL2 TTLL10 MIR6727 LOC107985728 HES4 MIR429 SCNN1D C1orf159 TTLL10-AS1 MIR6808 SDF4 CPTP MIR200A ANKRD65 FAM132A TAS1R3 KLHL17 MIR6726 DVL1 LINC01342 RNF223 AGRN LOC148413 CPSF3L NOC2L
nsv544895 Chr.1:917392 - 1054900 on Build GRCh38 Loss PERM1 LOC107985728 KLHL17 HES4 PLEKHN1 SAMD11 LOC100130417 AGRN LOC284600 ISG15 NOC2L
nsv832980 Chr.1:848279 - 1007037 on Build GRCh38 Gain PERM1 LOC107985728 KLHL17 HES4 PLEKHN1 SAMD11 FAM41C LOC100130417 LINC01128 LOC284600 NOC2L
nsv544897 Chr.1:924665 - 934930 on Build GRCh38 Gain+Loss LOC107985728 SAMD11

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More Information


Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:


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