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See other LIME1 CNV Assays ›
Gene Symbol
LIME1
Assay Reference Genome
Location

Chr.20:63738246 on build GRCh38
Cytoband
20q13.33
Assay ID Hs01941812_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 54923

Gene Name:

 Lck interacting transmembrane adaptor 1

Gene Aliases:

 LIME, dJ583P15.4

Location:

 Chr.20:63735701-63739107 on Build GRCh38

Assay Gene Location:

 Within Exon 6
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
LIME1 NM_001305654.1 5 800 NP_001292583.1
NM_001305655.1 5 567 NP_001292584.1
NM_017806.3 5 602 NP_060276.2
AK000413.1 5 419 BAA91148.1
AK054722.1 3 1651
AY203957.1 5 800 AAP34480.1
BC017016.1 5 367 AAH17016.1
BP368475.1 5 436

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2722959 Chr.20:63715664 - 63806918 on Build GRCh38 Deletion ZBTB46 LIME1 SLC2A4RG ZGPAT
nsv953308 Chr.20:63650148 - 63831847 on Build GRCh38 Deletion STMN3 RTEL1-TNFRSF6B ARFRP1 ZBTB46-AS1 TNFRSF6B ZBTB46 RTEL1 LIME1 SLC2A4RG ZGPAT
nsv586615 Chr.20:63734204 - 63741603 on Build GRCh38 Gain LIME1 SLC2A4RG ZGPAT
nsv586614 Chr.20:63725275 - 63741460 on Build GRCh38 Gain LIME1 SLC2A4RG ZGPAT
nsv1160690 Chr.20:63639552 - 63744287 on Build GRCh38 Deletion STMN3 RTEL1-TNFRSF6B ARFRP1 TNFRSF6B ZBTB46 RTEL1 LIME1 SLC2A4RG ZGPAT
nsv586618 Chr.20:63736025 - 63740688 on Build GRCh38 Gain LIME1 SLC2A4RG ZGPAT
nsv428381 Chr.20:63583375 - 64334167 on Build GRCh38 Gain+Loss MIR941-5 MIR941-1 MIR941-4 PRPF6 RGS19 MIR1914 MIR941-3 C20orf181 RTEL1 OPRL1 ZGPAT LKAAEAR1 STMN3 MIR6813 RTEL1-TNFRSF6B ARFRP1 MIR941-2 MIR647 LINC00176 MYT1 ZNF512B UCKL1 DNAJC5 SAMD10 TPD52L2 PCMTD2 SOX18 LINC00266-1 LOC100505771 NPBWR2 ZBTB46-AS1 ABHD16B TNFRSF6B GMEB2 TCEA2 ZBTB46 UCKL1-AS1 LIME1 SLC2A4RG
esv7227 Chr.20:63715550 - 63807161 on Build GRCh38 Loss ZBTB46 LIME1 SLC2A4RG ZGPAT
nsv1059142 Chr.20:63731978 - 63798885 on Build GRCh38 Gain ZBTB46 LIME1 SLC2A4RG ZGPAT
nsv470563 Chr.20:63486715 - 63793308 on Build GRCh38 Loss PTK6 SRMS EEF1A2 RTEL1 ZGPAT STMN3 LOC100505771 RTEL1-TNFRSF6B ARFRP1 HELZ2 TNFRSF6B GMEB2 PPDPF ZBTB46 FNDC11 LIME1 SLC2A4RG
esv29394 Chr.20:63737285 - 63740490 on Build GRCh38 Loss LIME1 SLC2A4RG
dgv7682n54 Chr.20:63737667 - 63740090 on Build GRCh38 Loss LIME1 SLC2A4RG
esv2758806 Chr.20:63470996 - 63745014 on Build GRCh38 Gain+Loss PTK6 SRMS EEF1A2 RTEL1 ZGPAT STMN3 LOC100505771 RTEL1-TNFRSF6B ARFRP1 KCNQ2 HELZ2 TNFRSF6B GMEB2 PPDPF ZBTB46 FNDC11 LIME1 SLC2A4RG
dgv7679n54 Chr.20:63737451 - 63740688 on Build GRCh38 Gain LIME1 SLC2A4RG

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More Information


Set Membership:

 Intragenic Exonic DGV Variation

Panther Classification:

Molecular Function -

scaffold/adaptor protein

Gene Ontology Categories:

Function(s)


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