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See other SAMD11 CNV Assays ›
Gene Symbol
SAMD11
Assay Reference Genome
Location

Chr.1:939137 on build GRCh38
Cytoband
1p36.33
Assay ID Hs02799732_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 148398

Gene Name:

 sterile alpha motif domain containing 11

Gene Aliases:

 MRS

Location:

 Chr.1:925741-944581 on Build GRCh38

Assay Gene Location:

 Overlaps Exon 6 - Intron 6
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SAMD11 NM_152486.2 NP_689699.2
BC024295.2 AAH24295.1
CN293867.1
CN342795.1
JX093066.1
JX093067.1
JX093068.1
JX093069.1
JX093070.1
JX093071.1
JX093072.1
JX093073.1
JX093074.1
JX093075.1
JX093076.1
JX093077.1
JX093078.1
JX093079.1
JX093080.1
JX093081.1
JX093082.1
JX093083.1
JX093084.1
JX093085.1
JX093086.1
JX093087.1
JX093088.1
JX093089.1
JX093090.1
JX093091.1
JX093092.1
JX093093.1
JX093094.1
JX093095.1
JX093096.1
JX093097.1
JX093098.1
JX093099.1
JX093100.1
JX093101.1
JX093102.1
JX093103.1
JX093104.1
JX093105.1
JX093106.1
JX093107.1
JX093108.1
JX093109.1
JX093110.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
dgv15n54 Chr.1:934063 - 943937 on Build GRCh38 Loss SAMD11
esv2762302 Chr.1:914637 - 1106320 on Build GRCh38 Gain LOC100130417 PLEKHN1 LOC100288175 KLHL17 ISG15 C1orf159 LOC105378948 PERM1 SAMD11 LOC107985728 HES4 RNF223 NOC2L LOC284600 AGRN
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss SSU72 LOC100130417 CCNL2 SLC35E2B LOC100133331 LOC100288175 LOC105378947 ISG15 MIR200A MIR429 PERM1 MIR6723 TNFRSF18 LOC107985728 SCNN1D MIR1302-2 LOC100129534 AGRN LOC100132287 MIR6859-1 TNFRSF4 SKI OR4F16 OR4F29 LOC100288069 GNB1 SAMD11 LOC101928626 MIR200B HES4 CDK11B ACAP3 MTND1P23 LOC105378589 PLEKHN1 LOC100287934 TMEM52 LOC100134822 LINC00115 LOC102725121 FAM41C CALML6 TMEM240 MMP23A LOC107984841 DDX11L1 DVL1 LINC01342 FAM138A GABRD SLC35E2 CFAP74 WASH7P ANKRD65 LOC148413 UBE2J2 VWA1 TMEM88B MIB2 LOC102724312 LOC107985729 AURKAIP1 FAM87B NOC2L MXRA8 B3GALT6 CDK11A ATAD3C LOC100506504 MMP23B TTLL10-AS1 FAAP20 MORN1 LINC01128 FNDC10 C1orf159 PUSL1 PRKCZ CPSF3L RNF223 SDF4 LOC105378592 LOC284600 MIR6859-2 TTLL10 LOC105378591 OR4F5 TAS1R3 FAM132A ATAD3A LOC105378949 MRPL20 NADK MTND2P28 MIR6727 CPTP LOC729737 KLHL17 MIR6726 LOC105378948 ATAD3B MIR6808
nsv950451 Chr.1:899421 - 1094520 on Build GRCh38 Deletion LOC100130417 PLEKHN1 LOC100288175 KLHL17 ISG15 C1orf159 LOC105378948 PERM1 SAMD11 LOC107985728 HES4 RNF223 NOC2L LOC284600 AGRN
nsv509035 Chr.1:891406 - 985724 on Build GRCh38 Insertion LOC100130417 PERM1 SAMD11 PLEKHN1 LOC107985728 NOC2L LOC284600 KLHL17
dgv8n54 Chr.1:925754 - 943937 on Build GRCh38 Loss SAMD11
nsv428334 Chr.1:874371 - 1220569 on Build GRCh38 Gain TTLL10 LOC100130417 PLEKHN1 LOC100288175 ISG15 MIR200A MIR429 PERM1 TNFRSF18 LOC107985728 NOC2L FAM41C AGRN TTLL10-AS1 TNFRSF4 KLHL17 LINC01342 C1orf159 LOC105378948 SAMD11 MIR200B HES4 RNF223 SDF4 LOC284600
dgv5n100 Chr.1:585989 - 1114424 on Build GRCh38 Gain LOC100130417 PLEKHN1 LOC100133331 LOC100288175 LOC105378947 ISG15 LOC100287934 PERM1 MIR6723 LINC00115 LOC107985728 FAM87B NOC2L FAM41C AGRN MTND2P28 OR4F16 LOC107984841 LINC01128 KLHL17 LOC100288069 C1orf159 LOC105378948 SAMD11 LOC101928626 HES4 RNF223 LOC284600 MTND1P23
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss SSU72 LOC100130417 CCNL2 ANKRD65 LOC148413 SLC35E2B LOC100288175 UBE2J2 ISG15 VWA1 MIR200A MIR429 TMEM88B MIB2 LOC102724312 PERM1 LOC107985729 TNFRSF18 LOC107985728 SCNN1D AURKAIP1 FAM87B NOC2L MXRA8 B3GALT6 CDK11A AGRN ATAD3C MMP23B TTLL10-AS1 TNFRSF4 LINC01128 FNDC10 LOC100288069 C1orf159 PUSL1 SAMD11 MIR200B CPSF3L HES4 RNF223 SDF4 CDK11B LOC284600 ACAP3 TTLL10 PLEKHN1 TAS1R3 FAM132A ATAD3A LOC100287934 MRPL20 NADK LINC00115 FAM41C TMEM240 MIR6727 MMP23A CPTP DVL1 KLHL17 MIR6726 LINC01342 LOC105378948 ATAD3B SLC35E2 MIR6808
dgv1n111 Chr.1:690090 - 939522 on Build GRCh38 Duplication LOC100130417 OR4F16 LOC100133331 LOC107984841 LINC01128 LOC100288069 LOC100287934 SAMD11 LINC00115 LOC107985728 FAM87B LOC284600 FAM41C
nsv517709 Chr.1:817186 - 1275912 on Build GRCh38 Gain+Loss TTLL10 LOC100130417 PLEKHN1 LOC100288175 UBE2J2 ISG15 MIR200A FAM132A MIR429 PERM1 TNFRSF18 LINC00115 LOC107985728 FAM87B NOC2L FAM41C B3GALT6 AGRN TTLL10-AS1 TNFRSF4 LINC01128 KLHL17 LINC01342 C1orf159 LOC105378948 SAMD11 MIR200B HES4 RNF223 SDF4 LOC284600
dgv3n111 Chr.1:783283 - 939522 on Build GRCh38 Duplication LOC100130417 LOC100287934 SAMD11 LINC00115 LINC01128 LOC107985728 FAM87B LOC284600 FAM41C
dgv2n67 Chr.1:877618 - 1426500 on Build GRCh38 Gain TTLL10 LOC100130417 CCNL2 ANKRD65 LOC148413 PLEKHN1 LOC100288175 UBE2J2 ISG15 MIR200A TAS1R3 FAM132A MIR429 TMEM88B MRPL20 PERM1 TNFRSF18 LOC107985728 SCNN1D AURKAIP1 NOC2L MXRA8 B3GALT6 AGRN MIR6727 TTLL10-AS1 TNFRSF4 CPTP DVL1 KLHL17 MIR6726 LINC01342 C1orf159 LOC105378948 PUSL1 SAMD11 MIR200B MIR6808 CPSF3L HES4 RNF223 SDF4 LOC284600 ACAP3
nsv544895 Chr.1:917392 - 1054900 on Build GRCh38 Loss LOC100130417 PERM1 SAMD11 PLEKHN1 LOC107985728 HES4 NOC2L LOC284600 KLHL17 ISG15 AGRN
nsv832980 Chr.1:848279 - 1007037 on Build GRCh38 Gain LOC100130417 PERM1 SAMD11 PLEKHN1 LINC01128 LOC107985728 HES4 NOC2L LOC284600 KLHL17 FAM41C
nsv544898 Chr.1:924665 - 943937 on Build GRCh38 Gain SAMD11 LOC107985728

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More Information


Set Membership:

 Intragenic Non-exonic DGV Variation

Panther Classification:


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