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See other SAMD11 CNV Assays ›
Gene Symbol
SAMD11
Assay Reference Genome
Location

Chr.1:944045 on build GRCh38
Cytoband
1p36.33
Assay ID Hs03041554_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 148398

Gene Name:

 sterile alpha motif domain containing 11

Gene Aliases:

 MRS

Location:

 Chr.1:925741-944581 on Build GRCh38

Assay Gene Location:

 Within Exon 14
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SAMD11 NM_152486.2 14 2018 NP_689699.2
AK054643.1 7 1519 BAB70781.1
BC024295.2 10 1593 AAH24295.1
BC033213.1 8 1383 AAH33213.1
BM055062.1
JX093066.1 12 1992
JX093067.1 13 1956
JX093068.1 13 1941
JX093069.1 12 1765
JX093070.1 13 1893
JX093071.1 13 1890
JX093072.1 10 1563
JX093073.1 13 1878
JX093074.1 13 1860
JX093075.1 12 1752
JX093076.1 12 1752
JX093077.1 12 1698
JX093078.1 12 2132
JX093079.1 11 1614
JX093080.1 11 2186
JX093081.1 11 1611
JX093082.1 12 2084
JX093083.1 11 2183
JX093084.1 10 1808
JX093085.1 8 910
JX093086.1 13 1867
JX093087.1 13 1807
JX093088.1 8 907
JX093089.1 13 1862
JX093090.1 13 1856
JX093091.1 5 833
JX093092.1
JX093093.1 12 1775
JX093094.1 12 1730
JX093095.1 12 1727
JX093096.1 11 1543
JX093097.1 10 1427
JX093098.1 7 1452
JX093099.1 13 2220
JX093100.1 14 2023
JX093101.1 13 1815
JX093102.1 7 1328
JX093103.1 13 1927
JX093104.1 10 2029
JX093105.1 12 1816
JX093106.1 11 1602
JX093107.1 10 1486
JX093108.1 12 1765
JX093109.1 9 1378
JX093110.1 10 1545

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2762302 Chr.1:914637 - 1106320 on Build GRCh38 Gain C1orf159 PLEKHN1 AGRN LOC100288175 LOC100130417 ISG15 NOC2L LOC284600 KLHL17 RNF223 SAMD11 HES4 LOC107985728 LOC105378948 PERM1
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss MRPL20 B3GALT6 SLC35E2 FAM132A CDK11B PUSL1 TMEM240 ATAD3A LOC729737 LOC100506504 PRKCZ AURKAIP1 WASH7P LOC284600 LOC100133331 C1orf159 MIR6723 LOC101928626 MIR6859-1 CCNL2 LOC100132287 TTLL10 MTND1P23 CALML6 MTND2P28 LOC107984841 LINC01128 CFAP74 MIR429 CDK11A CPTP PLEKHN1 FAM138A TMEM52 SCNN1D FAM87B LOC100288175 TTLL10-AS1 LOC100287934 DDX11L1 MIR6859-2 GNB1 LOC102724312 MORN1 AGRN LOC100130417 MIR6808 LOC100134822 SAMD11 DVL1 SDF4 LOC100129534 LOC105378592 ACAP3 LOC107985729 LOC105378949 SLC35E2B LOC105378947 LOC100288069 SSU72 FAAP20 UBE2J2 LOC105378948 CPSF3L LINC01342 TNFRSF18 MIR200B TMEM88B MIR1302-2 ATAD3C OR4F5 TAS1R3 MIB2 KLHL17 LOC105378591 FNDC10 OR4F29 MMP23B GABRD NADK LOC102725121 OR4F16 LOC148413 ATAD3B ISG15 MIR6727 NOC2L ANKRD65 MXRA8 SKI HES4 LOC107985728 MIR200A MIR6726 LINC00115 VWA1 TNFRSF4 FAM41C LOC105378589 RNF223 MMP23A PERM1
nsv950451 Chr.1:899421 - 1094520 on Build GRCh38 Deletion C1orf159 PLEKHN1 AGRN LOC100288175 LOC100130417 ISG15 NOC2L LOC284600 KLHL17 RNF223 SAMD11 HES4 LOC107985728 LOC105378948 PERM1
nsv509035 Chr.1:891406 - 985724 on Build GRCh38 Insertion LOC100130417 PLEKHN1 NOC2L LOC284600 KLHL17 SAMD11 LOC107985728 PERM1
dgv9n54 Chr.1:925754 - 952840 on Build GRCh38 Loss NOC2L SAMD11
nsv428334 Chr.1:874371 - 1220569 on Build GRCh38 Gain SDF4 PLEKHN1 LOC100288175 TTLL10-AS1 ISG15 NOC2L LOC284600 HES4 LOC107985728 LOC105378948 C1orf159 LINC01342 TNFRSF18 MIR200B TTLL10 MIR200A AGRN LOC100130417 TNFRSF4 FAM41C KLHL17 RNF223 SAMD11 MIR429 PERM1
dgv5n100 Chr.1:585989 - 1114424 on Build GRCh38 Gain PLEKHN1 OR4F16 FAM87B LOC100288175 LOC105378947 ISG15 LOC100288069 LOC100287934 NOC2L LOC284600 HES4 LOC100133331 LOC107985728 LOC105378948 C1orf159 MIR6723 LOC101928626 MTND1P23 AGRN LINC00115 MTND2P28 LOC107984841 LOC100130417 LINC01128 FAM41C KLHL17 RNF223 SAMD11 PERM1
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss SDF4 MRPL20 B3GALT6 SLC35E2 FAM132A ACAP3 CDK11B PUSL1 TMEM240 LOC107985729 SLC35E2B ATAD3A LOC100288069 SSU72 AURKAIP1 LOC284600 UBE2J2 LOC105378948 C1orf159 CPSF3L LINC01342 TNFRSF18 CCNL2 MIR200B TMEM88B TTLL10 ATAD3C TAS1R3 LINC01128 MIB2 KLHL17 MIR429 CDK11A FNDC10 CPTP MMP23B PLEKHN1 NADK SCNN1D LOC148413 ATAD3B FAM87B LOC100288175 TTLL10-AS1 ISG15 MIR6727 LOC100287934 NOC2L ANKRD65 MXRA8 HES4 LOC107985728 LOC102724312 MIR200A MIR6726 AGRN LINC00115 VWA1 LOC100130417 TNFRSF4 FAM41C MIR6808 RNF223 SAMD11 MMP23A DVL1 PERM1
nsv517709 Chr.1:817186 - 1275912 on Build GRCh38 Gain+Loss SDF4 B3GALT6 PLEKHN1 FAM132A FAM87B LOC100288175 TTLL10-AS1 ISG15 NOC2L LOC284600 HES4 UBE2J2 LOC107985728 LOC105378948 C1orf159 LINC01342 TNFRSF18 MIR200B TTLL10 MIR200A AGRN LINC00115 LOC100130417 LINC01128 TNFRSF4 FAM41C KLHL17 RNF223 SAMD11 MIR429 PERM1
nsv1013524 Chr.1:939510 - 1161955 on Build GRCh38 Gain C1orf159 LINC01342 PLEKHN1 AGRN LOC100288175 ISG15 NOC2L KLHL17 RNF223 SAMD11 HES4 LOC105378948 PERM1
dgv2n67 Chr.1:877618 - 1426500 on Build GRCh38 Gain SDF4 CPTP MRPL20 B3GALT6 PLEKHN1 FAM132A ACAP3 SCNN1D LOC148413 PUSL1 LOC100288175 TTLL10-AS1 ISG15 MIR6727 AURKAIP1 NOC2L ANKRD65 MXRA8 LOC284600 HES4 UBE2J2 LOC107985728 LOC105378948 C1orf159 CPSF3L LINC01342 TNFRSF18 CCNL2 MIR200B TMEM88B TTLL10 MIR200A MIR6726 AGRN TAS1R3 LOC100130417 TNFRSF4 MIR6808 KLHL17 RNF223 SAMD11 MIR429 DVL1 PERM1
nsv544895 Chr.1:917392 - 1054900 on Build GRCh38 Loss AGRN LOC100130417 ISG15 PLEKHN1 NOC2L LOC284600 KLHL17 SAMD11 HES4 LOC107985728 PERM1
nsv1160644 Chr.1:939652 - 1220663 on Build GRCh38 Deletion C1orf159 SDF4 LINC01342 TNFRSF18 PLEKHN1 MIR200B TTLL10 MIR200A AGRN LOC100288175 TTLL10-AS1 ISG15 TNFRSF4 NOC2L KLHL17 RNF223 SAMD11 HES4 MIR429 LOC105378948 PERM1
nsv832980 Chr.1:848279 - 1007037 on Build GRCh38 Gain LOC100130417 PLEKHN1 LINC01128 FAM41C NOC2L LOC284600 KLHL17 SAMD11 HES4 LOC107985728 PERM1

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More Information


Set Membership:

 Intragenic Exonic DGV Variation

Panther Classification:


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