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See other LIME1 CNV Assays ›
Gene Symbol
LIME1
Assay Reference Genome
Location

Chr.20:63738009 on build GRCh38
Cytoband
20q13.33
Assay ID Hs03071593_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 54923

Gene Name:

 Lck interacting transmembrane adaptor 1

Gene Aliases:

 LIME, dJ583P15.4

Location:

 Chr.20:63735701-63739107 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 4 - Exon 5
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
LIME1 NM_001305654.1 NP_001292583.1
NM_001305655.1 NP_001292584.1
NM_017806.3 NP_060276.2
AK000413.1 BAA91148.1
AK054722.1
AY203957.1 AAP34480.1
BC017016.1 AAH17016.1
BI911934.1 3 583
BP368475.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2722959 Chr.20:63715664 - 63806918 on Build GRCh38 Deletion SLC2A4RG ZGPAT ZBTB46 LIME1
nsv953308 Chr.20:63650148 - 63831847 on Build GRCh38 Deletion SLC2A4RG TNFRSF6B RTEL1-TNFRSF6B STMN3 ARFRP1 ZGPAT ZBTB46 RTEL1 LIME1 ZBTB46-AS1
nsv586615 Chr.20:63734204 - 63741603 on Build GRCh38 Gain SLC2A4RG ZGPAT LIME1
nsv586614 Chr.20:63725275 - 63741460 on Build GRCh38 Gain SLC2A4RG ZGPAT LIME1
nsv1160690 Chr.20:63639552 - 63744287 on Build GRCh38 Deletion SLC2A4RG TNFRSF6B RTEL1-TNFRSF6B STMN3 ARFRP1 ZGPAT ZBTB46 RTEL1 LIME1
nsv586618 Chr.20:63736025 - 63740688 on Build GRCh38 Gain SLC2A4RG ZGPAT LIME1
nsv428381 Chr.20:63583375 - 64334167 on Build GRCh38 Gain+Loss SOX18 LINC00176 MIR941-5 ZNF512B MYT1 MIR6813 ARFRP1 ZBTB46 GMEB2 RTEL1 LINC00266-1 LIME1 PCMTD2 RGS19 MIR941-4 RTEL1-TNFRSF6B TCEA2 TPD52L2 STMN3 NPBWR2 ZGPAT SAMD10 MIR941-2 UCKL1 LKAAEAR1 MIR941-1 TNFRSF6B ABHD16B OPRL1 C20orf181 UCKL1-AS1 DNAJC5 LOC100505771 MIR647 SLC2A4RG PRPF6 MIR941-3 MIR1914 ZBTB46-AS1
esv7227 Chr.20:63715550 - 63807161 on Build GRCh38 Loss SLC2A4RG ZGPAT ZBTB46 LIME1
nsv1059142 Chr.20:63731978 - 63798885 on Build GRCh38 Gain SLC2A4RG ZGPAT ZBTB46 LIME1
nsv470563 Chr.20:63486715 - 63793308 on Build GRCh38 Loss TNFRSF6B HELZ2 ARFRP1 FNDC11 ZBTB46 GMEB2 RTEL1 PPDPF SRMS LIME1 LOC100505771 SLC2A4RG RTEL1-TNFRSF6B STMN3 EEF1A2 PTK6 ZGPAT
esv29394 Chr.20:63737285 - 63740490 on Build GRCh38 Loss SLC2A4RG LIME1
dgv7682n54 Chr.20:63737667 - 63740090 on Build GRCh38 Loss SLC2A4RG LIME1
esv2758806 Chr.20:63470996 - 63745014 on Build GRCh38 Gain+Loss TNFRSF6B HELZ2 KCNQ2 ARFRP1 FNDC11 ZBTB46 GMEB2 RTEL1 PPDPF SRMS LIME1 LOC100505771 SLC2A4RG RTEL1-TNFRSF6B STMN3 EEF1A2 PTK6 ZGPAT
dgv7679n54 Chr.20:63737451 - 63740688 on Build GRCh38 Gain SLC2A4RG LIME1

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More Information


Set Membership:

 Intragenic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

scaffold/adaptor protein

Gene Ontology Categories:

Function(s)


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