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See other SAMD11 CNV Assays ›
Gene Symbol
SAMD11
Assay Reference Genome
Location

Chr.1:940707 on build GRCh38
Cytoband
1p36.33
Assay ID Hs03340602_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 148398

Gene Name:

 sterile alpha motif domain containing 11

Gene Aliases:

 MRS

Location:

 Chr.1:925741-944581 on Build GRCh38

Assay Gene Location:

 Within Intron 7
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SAMD11 NM_152486.2 NP_689699.2
AK054643.1 BAB70781.1
BC024295.2 AAH24295.1
BC033213.1 AAH33213.1
CN293867.1
JX093066.1
JX093067.1
JX093068.1
JX093069.1
JX093070.1
JX093071.1
JX093072.1
JX093073.1
JX093074.1
JX093075.1
JX093076.1
JX093077.1
JX093078.1
JX093079.1
JX093080.1
JX093081.1
JX093082.1
JX093083.1
JX093084.1
JX093085.1
JX093086.1
JX093087.1
JX093088.1
JX093089.1
JX093090.1
JX093091.1
JX093092.1
JX093093.1
JX093094.1
JX093095.1
JX093096.1
JX093097.1
JX093098.1
JX093099.1
JX093100.1
JX093101.1
JX093102.1
JX093103.1
JX093104.1
JX093105.1
JX093106.1
JX093107.1
JX093108.1
JX093109.1
JX093110.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
dgv15n54 Chr.1:934063 - 943937 on Build GRCh38 Loss SAMD11
esv2762302 Chr.1:914637 - 1106320 on Build GRCh38 Gain LOC100130417 LOC107985728 LOC105378948 ISG15 AGRN RNF223 LOC284600 KLHL17 HES4 NOC2L LOC100288175 SAMD11 PLEKHN1 PERM1 C1orf159
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss LOC102725121 MIR6859-2 LOC107985728 MIR1302-2 LOC105378949 NADK ANKRD65 LOC100506504 DDX11L1 LOC100287934 ATAD3A TMEM52 TMEM240 TMEM88B LOC729737 DVL1 MXRA8 OR4F5 PLEKHN1 ATAD3B LOC107985729 SCNN1D LOC100130417 PUSL1 LINC01342 SLC35E2B LOC101928626 MMP23B LOC100129534 TTLL10-AS1 MMP23A LOC148413 PERM1 MIR6859-1 AURKAIP1 CCNL2 LOC102724312 FAM132A MIB2 KLHL17 VWA1 HES4 MIR429 CPTP MIR6726 SAMD11 FAAP20 LOC105378948 SKI SSU72 ISG15 FAM87B TNFRSF4 LOC105378589 NOC2L LINC01128 ACAP3 SLC35E2 MIR200B CPSF3L OR4F29 CDK11A LOC105378591 AGRN MIR200A FNDC10 FAM138A B3GALT6 MTND2P28 CDK11B TTLL10 LOC100133331 TAS1R3 GABRD ATAD3C LINC00115 WASH7P SDF4 MIR6727 GNB1 MORN1 C1orf159 MIR6808 MIR6723 LOC100288069 UBE2J2 RNF223 LOC284600 LOC105378592 CALML6 LOC107984841 LOC105378947 OR4F16 CFAP74 LOC100288175 LOC100132287 FAM41C PRKCZ MRPL20 LOC100134822 TNFRSF18 MTND1P23
nsv950451 Chr.1:899421 - 1094520 on Build GRCh38 Deletion LOC100130417 LOC107985728 LOC105378948 ISG15 AGRN RNF223 LOC284600 KLHL17 HES4 NOC2L LOC100288175 SAMD11 PLEKHN1 PERM1 C1orf159
nsv509035 Chr.1:891406 - 985724 on Build GRCh38 Insertion KLHL17 LOC100130417 LOC107985728 NOC2L SAMD11 PLEKHN1 PERM1 LOC284600
dgv8n54 Chr.1:925754 - 943937 on Build GRCh38 Loss SAMD11
nsv428334 Chr.1:874371 - 1220569 on Build GRCh38 Gain LOC100130417 LOC107985728 LOC105378948 ISG15 LINC01342 TNFRSF4 SDF4 NOC2L TTLL10-AS1 PERM1 MIR200B C1orf159 AGRN RNF223 MIR200A LOC284600 KLHL17 HES4 MIR429 LOC100288175 SAMD11 FAM41C PLEKHN1 TTLL10 TNFRSF18
dgv5n100 Chr.1:585989 - 1114424 on Build GRCh38 Gain LOC100130417 LOC107985728 LOC105378948 ISG15 FAM87B LINC00115 LOC101928626 NOC2L LINC01128 PERM1 C1orf159 MIR6723 LOC100288069 AGRN RNF223 LOC100287934 LOC284600 KLHL17 LOC107984841 HES4 LOC105378947 OR4F16 LOC100288175 SAMD11 MTND2P28 FAM41C PLEKHN1 LOC100133331 MTND1P23
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss LOC107985728 LOC105378948 SSU72 ISG15 FAM87B TNFRSF4 NADK NOC2L LINC01128 ANKRD65 ACAP3 SLC35E2 MIR200B CPSF3L CDK11A AGRN MIR200A LOC100287934 FNDC10 B3GALT6 ATAD3A TMEM240 TMEM88B DVL1 MXRA8 PLEKHN1 CDK11B TTLL10 ATAD3B LOC107985729 SCNN1D TAS1R3 LOC100130417 ATAD3C LINC00115 PUSL1 LINC01342 SLC35E2B SDF4 MMP23B TTLL10-AS1 MMP23A MIR6727 LOC148413 PERM1 C1orf159 MIR6808 AURKAIP1 CCNL2 LOC102724312 FAM132A LOC100288069 UBE2J2 RNF223 MIB2 LOC284600 KLHL17 VWA1 HES4 MIR429 CPTP LOC100288175 MIR6726 SAMD11 FAM41C MRPL20 TNFRSF18
nsv517709 Chr.1:817186 - 1275912 on Build GRCh38 Gain+Loss LOC100130417 LOC107985728 LOC105378948 ISG15 FAM87B LINC00115 LINC01342 TNFRSF4 SDF4 NOC2L TTLL10-AS1 LINC01128 PERM1 MIR200B C1orf159 FAM132A UBE2J2 AGRN RNF223 MIR200A LOC284600 B3GALT6 KLHL17 HES4 MIR429 LOC100288175 SAMD11 FAM41C PLEKHN1 TTLL10 TNFRSF18
nsv1013524 Chr.1:939510 - 1161955 on Build GRCh38 Gain LOC105378948 ISG15 AGRN RNF223 LINC01342 KLHL17 HES4 NOC2L LOC100288175 SAMD11 PLEKHN1 PERM1 C1orf159
dgv2n67 Chr.1:877618 - 1426500 on Build GRCh38 Gain SCNN1D TAS1R3 LOC100130417 LOC107985728 LOC105378948 ISG15 PUSL1 LINC01342 TNFRSF4 SDF4 NOC2L TTLL10-AS1 MIR6727 ANKRD65 ACAP3 LOC148413 PERM1 MIR200B C1orf159 MIR6808 CPSF3L AURKAIP1 CCNL2 FAM132A UBE2J2 AGRN RNF223 MIR200A LOC284600 B3GALT6 KLHL17 HES4 MIR429 CPTP LOC100288175 MIR6726 SAMD11 TMEM88B MRPL20 DVL1 MXRA8 PLEKHN1 TTLL10 TNFRSF18
nsv544895 Chr.1:917392 - 1054900 on Build GRCh38 Loss KLHL17 HES4 LOC100130417 LOC107985728 NOC2L SAMD11 ISG15 AGRN PLEKHN1 PERM1 LOC284600
nsv1160644 Chr.1:939652 - 1220663 on Build GRCh38 Deletion LOC105378948 ISG15 AGRN RNF223 MIR200A LINC01342 TNFRSF4 SDF4 KLHL17 HES4 MIR429 NOC2L LOC100288175 TTLL10-AS1 SAMD11 PLEKHN1 TTLL10 PERM1 TNFRSF18 MIR200B C1orf159
nsv832980 Chr.1:848279 - 1007037 on Build GRCh38 Gain KLHL17 HES4 LOC100130417 LOC107985728 NOC2L SAMD11 FAM41C LINC01128 PLEKHN1 PERM1 LOC284600
nsv544898 Chr.1:924665 - 943937 on Build GRCh38 Gain LOC107985728 SAMD11

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More Information


Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:


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