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Assay Reference Genome
Location

Chr.1:902874 on build GRCh38
Cytoband
1p36.33
Assay ID Hs03343649_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
dgv4n111 Chr.1:869076 - 914637 on Build GRCh38 Duplication LOC284600 FAM41C
nsv1004962 Chr.1:629241 - 915295 on Build GRCh38 Gain LINC01128 LOC284600 MTND1P23 LINC00115 OR4F16 FAM41C LOC100133331 LOC100287934 FAM87B LOC107984841 MTND2P28 LOC100288069 MIR6723
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss PRKCZ LINC01128 MORN1 CDK11A KLHL17 MXRA8 C1orf159 LOC105378948 LINC01342 MIR429 ATAD3C PUSL1 LOC100287934 HES4 LOC148413 LOC100288069 FNDC10 TMEM240 MMP23B GNB1 SAMD11 LOC729737 LOC100288175 LOC100506504 ISG15 TAS1R3 FAM138A TNFRSF18 UBE2J2 NADK MIR200A TTLL10-AS1 MIB2 MIR6727 NOC2L LOC107985728 AGRN ANKRD65 LOC105378947 LINC00115 ATAD3A LOC100129534 FAM87B LOC100130417 LOC100132287 LOC105378949 MTND1P23 RNF223 LOC100133331 FAM132A CALML6 FAAP20 WASH7P MIR6726 AURKAIP1 LOC101928626 LOC105378589 TNFRSF4 B3GALT6 CDK11B TTLL10 MIR6723 LOC105378591 ATAD3B MRPL20 FAM41C CFAP74 DDX11L1 MIR200B PLEKHN1 SCNN1D LOC107984841 TMEM88B LOC105378592 OR4F29 TMEM52 CPSF3L CPTP DVL1 MIR6859-2 CCNL2 SLC35E2 MIR1302-2 SDF4 LOC107985729 MTND2P28 PERM1 OR4F5 LOC102724312 LOC102725121 SKI LOC284600 MIR6808 VWA1 ACAP3 OR4F16 SSU72 SLC35E2B LOC100134822 MIR6859-1 MMP23A GABRD
nsv950451 Chr.1:899421 - 1094520 on Build GRCh38 Deletion LOC284600 KLHL17 RNF223 C1orf159 SAMD11 LOC100288175 LOC105378948 ISG15 NOC2L HES4 PLEKHN1 LOC107985728 AGRN PERM1 LOC100130417
nsv509035 Chr.1:891406 - 985724 on Build GRCh38 Insertion NOC2L LOC284600 KLHL17 PLEKHN1 LOC107985728 SAMD11 PERM1 LOC100130417
dgv1n67 Chr.1:811028 - 914557 on Build GRCh38 Gain LINC01128 LOC284600 LINC00115 FAM87B FAM41C
nsv1005935 Chr.1:805477 - 915295 on Build GRCh38 Gain LINC01128 LOC284600 LINC00115 FAM87B FAM41C
esv3584981 Chr.1:837710 - 917284 on Build GRCh38 Loss LINC01128 LOC284600 FAM41C LOC100130417
nsv1009537 Chr.1:841742 - 915295 on Build GRCh38 Gain LINC01128 LOC284600 FAM41C
nsv428334 Chr.1:874371 - 1220569 on Build GRCh38 Gain MIR200A KLHL17 RNF223 TTLL10-AS1 C1orf159 LOC105378948 LINC01342 MIR429 NOC2L HES4 LOC107985728 SDF4 TNFRSF4 TTLL10 AGRN PERM1 LOC284600 SAMD11 LOC100288175 FAM41C ISG15 MIR200B PLEKHN1 TNFRSF18 LOC100130417
dgv5n100 Chr.1:585989 - 1114424 on Build GRCh38 Gain LINC01128 MTND1P23 KLHL17 RNF223 C1orf159 LOC105378948 LOC100133331 NOC2L LOC100287934 HES4 LOC107985728 MTND2P28 LOC101928626 LOC100288069 AGRN PERM1 MIR6723 LOC284600 LOC105378947 LINC00115 SAMD11 LOC100288175 OR4F16 FAM41C ISG15 PLEKHN1 FAM87B LOC107984841 LOC100130417
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss LINC01128 CDK11A KLHL17 RNF223 MXRA8 C1orf159 LOC105378948 LINC01342 MIR429 ATAD3C FAM132A PUSL1 LOC100287934 HES4 MIR6726 AURKAIP1 LOC148413 TNFRSF4 B3GALT6 CDK11B TTLL10 LOC100288069 FNDC10 TMEM240 ATAD3B MMP23B SAMD11 LOC100288175 MRPL20 FAM41C ISG15 TAS1R3 MIR200B PLEKHN1 SCNN1D TMEM88B TNFRSF18 UBE2J2 NADK CPSF3L MIR200A TTLL10-AS1 CPTP DVL1 MIB2 MIR6727 NOC2L CCNL2 LOC107985728 SLC35E2 SDF4 LOC107985729 AGRN PERM1 LOC102724312 LOC284600 ANKRD65 LINC00115 MIR6808 VWA1 ACAP3 ATAD3A SSU72 SLC35E2B FAM87B MMP23A LOC100130417
dgv1n111 Chr.1:690090 - 939522 on Build GRCh38 Duplication LINC01128 LOC284600 LINC00115 SAMD11 OR4F16 FAM41C LOC100133331 LOC100287934 LOC107985728 FAM87B LOC107984841 LOC100288069 LOC100130417
nsv517709 Chr.1:817186 - 1275912 on Build GRCh38 Gain+Loss LINC01128 MIR200A KLHL17 RNF223 TTLL10-AS1 C1orf159 LOC105378948 LINC01342 MIR429 NOC2L FAM132A HES4 LOC107985728 SDF4 TNFRSF4 B3GALT6 TTLL10 AGRN PERM1 LOC284600 LINC00115 SAMD11 LOC100288175 FAM41C ISG15 MIR200B PLEKHN1 FAM87B TNFRSF18 UBE2J2 LOC100130417
dgv3n111 Chr.1:783283 - 939522 on Build GRCh38 Duplication LINC01128 LOC284600 LOC100287934 LINC00115 LOC107985728 FAM87B SAMD11 FAM41C LOC100130417
dgv2n67 Chr.1:877618 - 1426500 on Build GRCh38 Gain CPSF3L MIR200A KLHL17 RNF223 TTLL10-AS1 MXRA8 C1orf159 LOC105378948 CPTP DVL1 LINC01342 MIR429 MIR6727 NOC2L FAM132A PUSL1 HES4 CCNL2 LOC107985728 MIR6726 AURKAIP1 SDF4 LOC148413 TNFRSF4 B3GALT6 TTLL10 AGRN PERM1 LOC284600 ANKRD65 MIR6808 SAMD11 LOC100288175 ACAP3 MRPL20 ISG15 TAS1R3 MIR200B PLEKHN1 SCNN1D TMEM88B TNFRSF18 UBE2J2 LOC100130417
nsv832980 Chr.1:848279 - 1007037 on Build GRCh38 Gain NOC2L LINC01128 LOC284600 HES4 KLHL17 PLEKHN1 LOC107985728 SAMD11 FAM41C PERM1 LOC100130417
esv3584976 Chr.1:733250 - 914824 on Build GRCh38 Gain LINC01128 LOC284600 LOC100287934 LINC00115 FAM87B LOC107984841 FAM41C LOC100288069

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More Information


Additional Information:

For this assay, SNP(s) [rs115305660] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intergenic/Unknown DGV Variation

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