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See other SAMD11 CNV Assays ›
Gene Symbol
SAMD11
Assay Reference Genome
Location

Chr.1:927174 on build GRCh38
Cytoband
1p36.33
Assay ID Hs03343940_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 148398

Gene Name:

 sterile alpha motif domain containing 11

Gene Aliases:

 MRS

Location:

 Chr.1:925741-944581 on Build GRCh38

Assay Gene Location:

 Within Intron 2
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SAMD11 NM_152486.2 NP_689699.2
CN342795.1
JX093066.1
JX093067.1
JX093068.1
JX093069.1
JX093070.1
JX093071.1
JX093072.1
JX093073.1
JX093074.1
JX093075.1
JX093076.1
JX093077.1
JX093078.1
JX093079.1
JX093080.1
JX093081.1
JX093082.1
JX093083.1
JX093084.1
JX093085.1
JX093086.1
JX093087.1
JX093088.1
JX093089.1
JX093090.1
JX093091.1
JX093092.1
JX093093.1
JX093094.1
JX093095.1
JX093096.1
JX093097.1
JX093098.1
JX093099.1
JX093100.1
JX093101.1
JX093102.1
JX093103.1
JX093104.1
JX093105.1
JX093106.1
JX093107.1
JX093108.1
JX093109.1
JX093110.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2762302 Chr.1:914637 - 1106320 on Build GRCh38 Gain AGRN PLEKHN1 LOC105378948 NOC2L KLHL17 LOC284600 LOC107985728 SAMD11 ISG15 C1orf159 HES4 LOC100130417 LOC100288175 RNF223 PERM1
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss WASH7P AGRN ATAD3C DDX11L1 FAM41C FAM138A LOC105378591 GNB1 TMEM88B LOC102725121 LOC148413 SSU72 TTLL10-AS1 TNFRSF18 FNDC10 NOC2L MIR6726 MIR6723 LOC107985728 LOC101928626 LINC01128 CDK11A LINC00115 MIB2 LOC100288175 LOC107984841 FAAP20 LOC107985729 MIR200A UBE2J2 PLEKHN1 SLC35E2B LOC100287934 CFAP74 NADK ACAP3 LOC100132287 LINC01342 ISG15 TTLL10 LOC100134822 CALML6 GABRD SLC35E2 LOC284600 TNFRSF4 VWA1 PRKCZ MXRA8 MTND1P23 RNF223 OR4F16 PERM1 MIR6727 TMEM240 MIR6859-1 SKI AURKAIP1 CPTP TAS1R3 OR4F5 LOC100133331 PUSL1 ATAD3A DVL1 ANKRD65 LOC105378949 LOC729737 MTND2P28 SAMD11 LOC100129534 HES4 LOC100130417 LOC100506504 TMEM52 B3GALT6 MIR6808 LOC105378948 LOC105378947 ATAD3B FAM132A LOC105378592 OR4F29 MIR6859-2 CCNL2 MMP23A CDK11B LOC100288069 LOC102724312 CPSF3L MIR1302-2 MORN1 FAM87B LOC105378589 SCNN1D MMP23B SDF4 KLHL17 MIR429 MRPL20 C1orf159 MIR200B
nsv950451 Chr.1:899421 - 1094520 on Build GRCh38 Deletion AGRN PLEKHN1 LOC105378948 NOC2L KLHL17 LOC284600 LOC107985728 SAMD11 ISG15 C1orf159 HES4 LOC100130417 LOC100288175 RNF223 PERM1
nsv509035 Chr.1:891406 - 985724 on Build GRCh38 Insertion SAMD11 PLEKHN1 NOC2L KLHL17 LOC284600 LOC100130417 PERM1 LOC107985728
dgv8n54 Chr.1:925754 - 943937 on Build GRCh38 Loss SAMD11
nsv428334 Chr.1:874371 - 1220569 on Build GRCh38 Gain MIR200A AGRN PLEKHN1 LOC105378948 FAM41C LINC01342 ISG15 TTLL10 TTLL10-AS1 TNFRSF18 SDF4 NOC2L KLHL17 MIR429 LOC284600 TNFRSF4 LOC107985728 SAMD11 C1orf159 HES4 LOC100130417 LOC100288175 RNF223 MIR200B PERM1
dgv5n100 Chr.1:585989 - 1114424 on Build GRCh38 Gain AGRN PLEKHN1 LOC105378948 LOC100287934 LOC105378947 FAM41C ISG15 LOC100133331 LOC100288069 FAM87B NOC2L KLHL17 LOC284600 MIR6723 LOC107985728 MTND2P28 SAMD11 LOC101928626 LINC01128 C1orf159 HES4 LINC00115 LOC100130417 MTND1P23 LOC100288175 LOC107984841 RNF223 OR4F16 PERM1
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss TMEM240 AGRN ATAD3C AURKAIP1 CPTP FAM41C TAS1R3 PUSL1 TMEM88B LOC148413 SSU72 ATAD3A TTLL10-AS1 DVL1 TNFRSF18 ANKRD65 FNDC10 NOC2L MIR6726 LOC107985728 SAMD11 LINC01128 CDK11A HES4 LINC00115 MIB2 LOC100130417 LOC100288175 LOC107985729 MIR200A UBE2J2 B3GALT6 MIR6808 PLEKHN1 SLC35E2B LOC105378948 LOC100287934 NADK ATAD3B FAM132A ACAP3 LINC01342 CCNL2 ISG15 MMP23A TTLL10 CDK11B LOC100288069 LOC102724312 CPSF3L FAM87B SCNN1D MMP23B SDF4 KLHL17 MIR429 SLC35E2 MRPL20 LOC284600 TNFRSF4 VWA1 MXRA8 C1orf159 RNF223 MIR200B PERM1 MIR6727
dgv1n111 Chr.1:690090 - 939522 on Build GRCh38 Duplication FAM87B LOC100287934 LOC284600 LOC107985728 FAM41C SAMD11 LINC01128 LINC00115 LOC100130417 LOC100133331 LOC100288069 LOC107984841 OR4F16
nsv517709 Chr.1:817186 - 1275912 on Build GRCh38 Gain+Loss MIR200A UBE2J2 AGRN B3GALT6 PLEKHN1 LOC105378948 FAM132A FAM41C LINC01342 ISG15 TTLL10 TTLL10-AS1 FAM87B TNFRSF18 SDF4 NOC2L KLHL17 MIR429 LOC284600 TNFRSF4 LOC107985728 SAMD11 LINC01128 C1orf159 HES4 LINC00115 LOC100130417 LOC100288175 RNF223 MIR200B PERM1
dgv3n111 Chr.1:783283 - 939522 on Build GRCh38 Duplication FAM41C FAM87B SAMD11 LOC100287934 LINC01128 LOC284600 LINC00115 LOC100130417 LOC107985728
dgv2n67 Chr.1:877618 - 1426500 on Build GRCh38 Gain MIR200A UBE2J2 AGRN B3GALT6 MIR6808 PLEKHN1 LOC105378948 FAM132A ACAP3 AURKAIP1 CPTP TAS1R3 LINC01342 CCNL2 ISG15 TTLL10 PUSL1 TMEM88B CPSF3L LOC148413 TTLL10-AS1 SCNN1D DVL1 TNFRSF18 ANKRD65 SDF4 NOC2L KLHL17 MIR429 MRPL20 LOC284600 MIR6726 TNFRSF4 LOC107985728 SAMD11 MXRA8 C1orf159 HES4 LOC100130417 LOC100288175 RNF223 MIR200B PERM1 MIR6727
nsv544895 Chr.1:917392 - 1054900 on Build GRCh38 Loss AGRN SAMD11 PLEKHN1 ISG15 NOC2L KLHL17 LOC284600 HES4 LOC100130417 PERM1 LOC107985728
nsv832980 Chr.1:848279 - 1007037 on Build GRCh38 Gain FAM41C SAMD11 PLEKHN1 NOC2L KLHL17 LINC01128 LOC284600 HES4 LOC100130417 PERM1 LOC107985728
nsv544897 Chr.1:924665 - 934930 on Build GRCh38 Gain+Loss SAMD11 LOC107985728

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More Information


Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:


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