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See other SAMD11 CNV Assays ›
Gene Symbol
SAMD11
Assay Reference Genome
Location

Chr.1:940460 on build GRCh38
Cytoband
1p36.33
Assay ID Hs03353087_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 148398

Gene Name:

 sterile alpha motif domain containing 11

Gene Aliases:

 MRS

Location:

 Chr.1:925741-944581 on Build GRCh38

Assay Gene Location:

 Within Intron 7
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SAMD11 NM_152486.2 NP_689699.2
AK054643.1 BAB70781.1
BC024295.2 AAH24295.1
BC033213.1 AAH33213.1
CN293867.1
JX093066.1
JX093067.1
JX093068.1
JX093069.1
JX093070.1
JX093071.1
JX093072.1
JX093073.1
JX093074.1
JX093075.1
JX093076.1
JX093077.1
JX093078.1
JX093079.1
JX093080.1
JX093081.1
JX093082.1
JX093083.1
JX093084.1
JX093085.1
JX093086.1
JX093087.1
JX093088.1
JX093089.1
JX093090.1
JX093091.1
JX093092.1
JX093093.1
JX093094.1
JX093095.1
JX093096.1
JX093097.1
JX093098.1
JX093099.1
JX093100.1
JX093101.1
JX093102.1
JX093103.1
JX093104.1
JX093105.1
JX093106.1
JX093107.1
JX093108.1
JX093109.1
JX093110.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
dgv15n54 Chr.1:934063 - 943937 on Build GRCh38 Loss SAMD11
esv2762302 Chr.1:914637 - 1106320 on Build GRCh38 Gain RNF223 PLEKHN1 LOC284600 KLHL17 ISG15 HES4 LOC100130417 AGRN NOC2L LOC107985728 C1orf159 LOC105378948 PERM1 LOC100288175 SAMD11
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss LOC100129534 OR4F5 OR4F16 FNDC10 CPTP FAM138A SCNN1D CCNL2 MIR200A LOC107985729 AURKAIP1 LOC100288069 MMP23B TTLL10 SDF4 LOC100506504 LOC100130417 NOC2L LOC729737 LOC100132287 CFAP74 LINC01128 DVL1 SAMD11 OR4F29 TNFRSF18 VWA1 MIR429 HES4 TMEM240 TTLL10-AS1 LOC105378591 TAS1R3 FAM132A B3GALT6 WASH7P TMEM52 MXRA8 MORN1 PUSL1 LOC105378949 MIR6727 LOC284600 MIB2 UBE2J2 CPSF3L C1orf159 LOC100288175 GNB1 FAM41C SSU72 ATAD3A MRPL20 NADK LOC102725121 PLEKHN1 DDX11L1 LOC105378947 FAM87B MTND2P28 MIR6859-2 FAAP20 LINC00115 GABRD MIR6859-1 MTND1P23 LOC101928626 LINC01342 CDK11A ACAP3 CALML6 SLC35E2 MMP23A MIR6726 LOC102724312 MIR6808 PRKCZ RNF223 MIR200B SKI ISG15 ANKRD65 LOC100133331 ATAD3B ATAD3C LOC105378948 PERM1 LOC100287934 MIR1302-2 LOC107984841 SLC35E2B LOC148413 KLHL17 LOC105378592 AGRN TMEM88B LOC100134822 LOC107985728 MIR6723 TNFRSF4 LOC105378589 CDK11B
nsv950451 Chr.1:899421 - 1094520 on Build GRCh38 Deletion RNF223 PLEKHN1 LOC284600 KLHL17 ISG15 HES4 LOC100130417 AGRN NOC2L LOC107985728 C1orf159 LOC105378948 PERM1 LOC100288175 SAMD11
nsv509035 Chr.1:891406 - 985724 on Build GRCh38 Insertion PLEKHN1 PERM1 LOC284600 KLHL17 SAMD11 LOC100130417 NOC2L LOC107985728
dgv8n54 Chr.1:925754 - 943937 on Build GRCh38 Loss SAMD11
nsv428334 Chr.1:874371 - 1220569 on Build GRCh38 Gain RNF223 PLEKHN1 MIR200B MIR429 ISG15 HES4 TTLL10-AS1 MIR200A LOC105378948 PERM1 TTLL10 LOC284600 KLHL17 SDF4 LOC100130417 AGRN NOC2L LINC01342 LOC107985728 C1orf159 LOC100288175 SAMD11 TNFRSF4 FAM41C TNFRSF18
dgv5n100 Chr.1:585989 - 1114424 on Build GRCh38 Gain RNF223 OR4F16 PLEKHN1 ISG15 HES4 LOC105378947 LOC100133331 FAM87B MTND2P28 LOC105378948 PERM1 LOC100287934 LOC100288069 LOC107984841 LINC00115 LOC284600 KLHL17 LOC100130417 AGRN MTND1P23 NOC2L LOC101928626 LOC107985728 C1orf159 LINC01128 LOC100288175 MIR6723 SAMD11 FAM41C
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss NADK PLEKHN1 FNDC10 CPTP SCNN1D FAM87B CCNL2 MIR200A LOC107985729 AURKAIP1 LOC100288069 MMP23B TTLL10 LINC00115 SDF4 LOC100130417 NOC2L LINC01342 CDK11A ACAP3 LINC01128 SLC35E2 DVL1 MMP23A SAMD11 MIR6726 LOC102724312 TNFRSF18 MIR6808 RNF223 VWA1 MIR200B MIR429 ISG15 HES4 TMEM240 TTLL10-AS1 ANKRD65 ATAD3B ATAD3C LOC105378948 TAS1R3 PERM1 FAM132A B3GALT6 LOC100287934 MXRA8 PUSL1 SLC35E2B MIR6727 LOC148413 LOC284600 KLHL17 MIB2 UBE2J2 AGRN TMEM88B CPSF3L LOC107985728 C1orf159 LOC100288175 TNFRSF4 FAM41C CDK11B SSU72 ATAD3A MRPL20
nsv517709 Chr.1:817186 - 1275912 on Build GRCh38 Gain+Loss RNF223 PLEKHN1 MIR200B MIR429 ISG15 HES4 TTLL10-AS1 FAM87B MIR200A LOC105378948 PERM1 FAM132A B3GALT6 TTLL10 LINC00115 LOC284600 KLHL17 SDF4 UBE2J2 LOC100130417 AGRN NOC2L LINC01342 LOC107985728 C1orf159 LINC01128 LOC100288175 SAMD11 TNFRSF4 FAM41C TNFRSF18
nsv1013524 Chr.1:939510 - 1161955 on Build GRCh38 Gain RNF223 PLEKHN1 KLHL17 ISG15 HES4 AGRN NOC2L LINC01342 C1orf159 LOC105378948 PERM1 LOC100288175 SAMD11
dgv2n67 Chr.1:877618 - 1426500 on Build GRCh38 Gain RNF223 PLEKHN1 MIR200B CPTP MIR429 ISG15 HES4 TTLL10-AS1 ANKRD65 SCNN1D CCNL2 MIR200A LOC105378948 TAS1R3 PERM1 FAM132A B3GALT6 AURKAIP1 MXRA8 PUSL1 TTLL10 MIR6727 LOC148413 LOC284600 KLHL17 SDF4 UBE2J2 LOC100130417 AGRN TMEM88B NOC2L CPSF3L LINC01342 LOC107985728 ACAP3 C1orf159 LOC100288175 DVL1 SAMD11 TNFRSF4 MIR6726 TNFRSF18 MIR6808 MRPL20
nsv544895 Chr.1:917392 - 1054900 on Build GRCh38 Loss PLEKHN1 PERM1 LOC284600 KLHL17 SAMD11 ISG15 HES4 LOC100130417 AGRN NOC2L LOC107985728
nsv1160644 Chr.1:939652 - 1220663 on Build GRCh38 Deletion TTLL10 RNF223 PLEKHN1 KLHL17 SDF4 MIR200B MIR429 ISG15 HES4 AGRN NOC2L TTLL10-AS1 LINC01342 C1orf159 MIR200A LOC105378948 PERM1 LOC100288175 SAMD11 TNFRSF4 TNFRSF18
nsv832980 Chr.1:848279 - 1007037 on Build GRCh38 Gain PLEKHN1 PERM1 LINC01128 LOC284600 KLHL17 SAMD11 FAM41C HES4 LOC100130417 NOC2L LOC107985728
nsv544898 Chr.1:924665 - 943937 on Build GRCh38 Gain SAMD11 LOC107985728

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More Information


Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:


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