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Assay Reference Genome
Location

Chr.1:901867 on build GRCh38
Cytoband
1p36.33
Assay ID Hs03369657_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
dgv4n111 Chr.1:869076 - 914637 on Build GRCh38 Duplication LOC284600 FAM41C
nsv1004962 Chr.1:629241 - 915295 on Build GRCh38 Gain FAM87B LOC100288069 LOC284600 LOC100287934 LINC01128 LINC00115 MTND1P23 MTND2P28 FAM41C LOC107984841 OR4F16 LOC100133331 MIR6723
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss CPSF3L LOC105378589 DVL1 KLHL17 CALML6 MORN1 FAM41C PUSL1 OR4F16 ATAD3B VWA1 LOC100288069 FAAP20 UBE2J2 TMEM52 MIR6859-2 LOC107985728 LOC100506504 PLEKHN1 LINC01128 SKI MIB2 MIR429 MMP23B OR4F5 TTLL10-AS1 ACAP3 GNB1 SCNN1D MIR6726 LOC148413 NOC2L LOC105378591 TNFRSF4 B3GALT6 LOC105378949 LOC105378592 TMEM240 CDK11B TAS1R3 LOC100133331 NADK OR4F29 ATAD3C LOC100288175 PRKCZ LINC01342 GABRD FAM87B MIR6859-1 WASH7P CPTP LINC00115 MTND1P23 ISG15 TNFRSF18 CCNL2 LOC101928626 LOC105378947 LOC102725121 LOC729737 MIR200A LOC100287934 ATAD3A PERM1 SDF4 C1orf159 LOC100130417 HES4 MIR6808 LOC107984841 SLC35E2B FAM138A MIR6727 TMEM88B LOC100134822 LOC284600 ANKRD65 SAMD11 CFAP74 FAM132A LOC102724312 DDX11L1 MTND2P28 FNDC10 LOC105378948 LOC100132287 SSU72 AURKAIP1 CDK11A MRPL20 LOC107985729 MIR200B TTLL10 RNF223 LOC100129534 MXRA8 MIR1302-2 AGRN MMP23A MIR6723 SLC35E2
nsv950451 Chr.1:899421 - 1094520 on Build GRCh38 Deletion LOC284600 SAMD11 PLEKHN1 KLHL17 PERM1 NOC2L C1orf159 LOC100130417 ISG15 HES4 RNF223 AGRN LOC105378948 LOC100288175 LOC107985728
nsv509035 Chr.1:891406 - 985724 on Build GRCh38 Insertion LOC284600 SAMD11 PLEKHN1 KLHL17 PERM1 NOC2L LOC100130417 LOC107985728
dgv1n67 Chr.1:811028 - 914557 on Build GRCh38 Gain FAM87B LOC284600 FAM41C LINC01128 LINC00115
nsv1005935 Chr.1:805477 - 915295 on Build GRCh38 Gain FAM87B LOC284600 FAM41C LINC01128 LINC00115
esv3584981 Chr.1:837710 - 917284 on Build GRCh38 Loss LOC284600 FAM41C LINC01128 LOC100130417
nsv1009537 Chr.1:841742 - 915295 on Build GRCh38 Gain LOC284600 FAM41C LINC01128
nsv428334 Chr.1:874371 - 1220569 on Build GRCh38 Gain LOC284600 SAMD11 PLEKHN1 KLHL17 ISG15 MIR429 TTLL10-AS1 FAM41C TNFRSF18 LOC105378948 MIR200A PERM1 NOC2L TNFRSF4 MIR200B SDF4 C1orf159 LOC100130417 TTLL10 HES4 RNF223 AGRN LOC100288175 LOC107985728 LINC01342
dgv5n100 Chr.1:585989 - 1114424 on Build GRCh38 Gain FAM87B LOC284600 SAMD11 PLEKHN1 KLHL17 LINC01128 LINC00115 MTND1P23 ISG15 MTND2P28 FAM41C LOC105378948 LOC101928626 LOC105378947 OR4F16 LOC100288069 LOC100287934 PERM1 NOC2L C1orf159 LOC100130417 HES4 RNF223 AGRN LOC107984841 LOC100133331 LOC100288175 MIR6723 LOC107985728
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss FAM87B CPSF3L DVL1 KLHL17 CPTP LINC00115 ISG15 FAM41C TNFRSF18 CCNL2 PUSL1 ATAD3B VWA1 LOC100288069 MIR200A LOC100287934 ATAD3A PERM1 SDF4 C1orf159 LOC100130417 HES4 UBE2J2 MIR6808 SLC35E2B LOC107985728 MIR6727 TMEM88B LOC284600 ANKRD65 SAMD11 PLEKHN1 FAM132A LINC01128 LOC102724312 MIB2 MIR429 MMP23B TTLL10-AS1 FNDC10 LOC105378948 SSU72 AURKAIP1 CDK11A MRPL20 ACAP3 LOC107985729 SCNN1D MIR6726 LOC148413 NOC2L TNFRSF4 MIR200B B3GALT6 TTLL10 RNF223 MXRA8 AGRN MMP23A TMEM240 CDK11B TAS1R3 NADK ATAD3C LOC100288175 SLC35E2 LINC01342
dgv1n111 Chr.1:690090 - 939522 on Build GRCh38 Duplication FAM87B LOC100288069 LOC284600 SAMD11 LOC100287934 LINC01128 LINC00115 LOC100130417 FAM41C LOC107984841 OR4F16 LOC100133331 LOC107985728
nsv517709 Chr.1:817186 - 1275912 on Build GRCh38 Gain+Loss FAM87B LOC284600 SAMD11 PLEKHN1 KLHL17 FAM132A LINC01128 LINC00115 ISG15 MIR429 TTLL10-AS1 FAM41C TNFRSF18 LOC105378948 MIR200A PERM1 NOC2L TNFRSF4 MIR200B SDF4 C1orf159 B3GALT6 LOC100130417 TTLL10 HES4 RNF223 AGRN UBE2J2 LOC100288175 LOC107985728 LINC01342
dgv3n111 Chr.1:783283 - 939522 on Build GRCh38 Duplication FAM87B LOC284600 SAMD11 FAM41C LOC100287934 LINC01128 LINC00115 LOC100130417 LOC107985728
dgv2n67 Chr.1:877618 - 1426500 on Build GRCh38 Gain MIR6727 TMEM88B CPSF3L LOC284600 ANKRD65 SAMD11 PLEKHN1 DVL1 KLHL17 FAM132A CPTP ISG15 MIR429 TTLL10-AS1 TNFRSF18 CCNL2 PUSL1 LOC105378948 AURKAIP1 MRPL20 ACAP3 SCNN1D MIR200A MIR6726 LOC148413 PERM1 NOC2L TNFRSF4 MIR200B SDF4 C1orf159 B3GALT6 LOC100130417 TTLL10 HES4 RNF223 MXRA8 AGRN UBE2J2 MIR6808 TAS1R3 LOC100288175 LOC107985728 LINC01342
nsv832980 Chr.1:848279 - 1007037 on Build GRCh38 Gain HES4 LOC284600 SAMD11 FAM41C PLEKHN1 KLHL17 PERM1 LINC01128 NOC2L LOC100130417 LOC107985728
esv3584976 Chr.1:733250 - 914824 on Build GRCh38 Gain FAM87B LOC100288069 LOC284600 FAM41C LOC100287934 LOC107984841 LINC01128 LINC00115

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More Information


Additional Information:

For this assay, SNP(s) [rs115809836] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intergenic/Unknown DGV Variation

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