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See other SAMD11 CNV Assays ›
Gene Symbol
SAMD11
Assay Reference Genome
Location

Chr.1:940154 on build GRCh38
Cytoband
1p36.33
Assay ID Hs03383649_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 148398

Gene Name:

 sterile alpha motif domain containing 11

Gene Aliases:

 MRS

Location:

 Chr.1:925741-944581 on Build GRCh38

Assay Gene Location:

 Within Intron 7
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SAMD11 NM_152486.2 NP_689699.2
AK054643.1 BAB70781.1
BC024295.2 AAH24295.1
BC033213.1 AAH33213.1
CN293867.1
JX093066.1
JX093067.1
JX093068.1
JX093069.1
JX093070.1
JX093071.1
JX093072.1
JX093073.1
JX093074.1
JX093075.1
JX093076.1
JX093077.1
JX093078.1
JX093079.1
JX093080.1
JX093081.1
JX093082.1
JX093083.1
JX093084.1
JX093085.1
JX093086.1
JX093087.1
JX093088.1
JX093089.1
JX093090.1
JX093091.1
JX093092.1
JX093093.1
JX093094.1
JX093095.1
JX093096.1
JX093097.1
JX093098.1
JX093099.1
JX093100.1
JX093101.1
JX093102.1
JX093103.1
JX093104.1
JX093105.1
JX093106.1
JX093107.1
JX093108.1
JX093109.1
JX093110.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
dgv15n54 Chr.1:934063 - 943937 on Build GRCh38 Loss SAMD11
esv2762302 Chr.1:914637 - 1106320 on Build GRCh38 Gain LOC105378948 LOC107985728 ISG15 C1orf159 LOC100288175 AGRN LOC284600 KLHL17 SAMD11 PERM1 HES4 NOC2L PLEKHN1 LOC100130417 RNF223
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss MIR200A MIR6723 LOC107985728 ISG15 C1orf159 LOC729737 CPTP LOC100129534 TMEM240 LOC107984841 ATAD3A MIR6808 ACAP3 VWA1 LINC01128 FAM87B WASH7P AURKAIP1 DVL1 SLC35E2 MMP23A AGRN OR4F29 LOC105378949 OR4F5 MORN1 MIR429 LOC101928626 CCNL2 GNB1 PRKCZ TMEM52 SDF4 LOC102725121 SAMD11 MIR6859-2 LOC148413 UBE2J2 CALML6 LOC100287934 FAM41C TNFRSF18 MIR6727 LOC107985729 SLC35E2B LOC284600 KLHL17 PERM1 LOC100288069 LINC00115 PLEKHN1 LOC100130417 MIR200B ATAD3B NADK FAAP20 LOC105378592 MTND2P28 LOC102724312 CDK11A OR4F16 TTLL10 LOC105378947 MTND1P23 LINC01342 PUSL1 MXRA8 SCNN1D LOC100133331 FNDC10 GABRD FAM132A MRPL20 ATAD3C CPSF3L MIB2 LOC105378948 CDK11B MIR6859-1 SSU72 SKI LOC100132287 TTLL10-AS1 LOC105378591 TAS1R3 TNFRSF4 NOC2L RNF223 MIR6726 MIR1302-2 CFAP74 B3GALT6 LOC100134822 LOC100288175 TMEM88B FAM138A LOC105378589 LOC100506504 DDX11L1 MMP23B HES4 ANKRD65
nsv950451 Chr.1:899421 - 1094520 on Build GRCh38 Deletion LOC105378948 LOC107985728 ISG15 C1orf159 LOC100288175 AGRN LOC284600 KLHL17 SAMD11 PERM1 HES4 NOC2L PLEKHN1 LOC100130417 RNF223
nsv509035 Chr.1:891406 - 985724 on Build GRCh38 Insertion LOC107985728 KLHL17 SAMD11 PERM1 NOC2L PLEKHN1 LOC100130417 LOC284600
dgv8n54 Chr.1:925754 - 943937 on Build GRCh38 Loss SAMD11
nsv428334 Chr.1:874371 - 1220569 on Build GRCh38 Gain MIR200A LOC105378948 LOC107985728 ISG15 C1orf159 TTLL10-AS1 SDF4 SAMD11 TTLL10 TNFRSF4 NOC2L RNF223 LINC01342 FAM41C TNFRSF18 LOC100288175 AGRN LOC284600 KLHL17 PERM1 HES4 PLEKHN1 MIR429 LOC100130417 MIR200B
dgv5n100 Chr.1:585989 - 1114424 on Build GRCh38 Gain MIR6723 LOC105378948 LOC107985728 ISG15 C1orf159 MTND2P28 OR4F16 SAMD11 LOC107984841 NOC2L LOC105378947 MTND1P23 LINC01128 RNF223 FAM87B LOC100133331 LOC100287934 FAM41C LOC100288175 AGRN LOC284600 KLHL17 PERM1 LOC100288069 LINC00115 HES4 PLEKHN1 LOC100130417 LOC101928626
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss MIR200A LOC107985728 ISG15 C1orf159 ATAD3B CPTP NADK LOC102724312 CDK11A TMEM240 TTLL10 ATAD3A MIR6808 ACAP3 VWA1 LINC01128 LINC01342 FAM87B PUSL1 MXRA8 SCNN1D AURKAIP1 FNDC10 DVL1 SLC35E2 MMP23A AGRN FAM132A MRPL20 ATAD3C MIR429 CCNL2 CPSF3L MIB2 LOC105378948 CDK11B SSU72 TTLL10-AS1 SDF4 SAMD11 LOC148413 UBE2J2 TAS1R3 TNFRSF4 NOC2L RNF223 MIR6726 LOC100287934 FAM41C B3GALT6 TNFRSF18 MIR6727 LOC100288175 TMEM88B LOC107985729 SLC35E2B LOC284600 KLHL17 MMP23B PERM1 LOC100288069 LINC00115 HES4 PLEKHN1 ANKRD65 LOC100130417 MIR200B
nsv517709 Chr.1:817186 - 1275912 on Build GRCh38 Gain+Loss MIR200A LOC105378948 LOC107985728 ISG15 C1orf159 TTLL10-AS1 SDF4 SAMD11 TTLL10 UBE2J2 TNFRSF4 NOC2L LINC01128 RNF223 LINC01342 FAM87B FAM41C B3GALT6 TNFRSF18 LOC100288175 AGRN LOC284600 FAM132A KLHL17 PERM1 LINC00115 HES4 PLEKHN1 MIR429 LOC100130417 MIR200B
nsv1013524 Chr.1:939510 - 1161955 on Build GRCh38 Gain LINC01342 LOC105378948 ISG15 C1orf159 LOC100288175 AGRN KLHL17 SAMD11 PERM1 HES4 NOC2L PLEKHN1 RNF223
dgv2n67 Chr.1:877618 - 1426500 on Build GRCh38 Gain MIR200A LOC105378948 LOC107985728 ISG15 C1orf159 CPTP TTLL10-AS1 SDF4 SAMD11 TTLL10 LOC148413 UBE2J2 TAS1R3 MIR6808 TNFRSF4 NOC2L ACAP3 RNF223 LINC01342 PUSL1 MIR6726 MXRA8 SCNN1D AURKAIP1 B3GALT6 DVL1 TNFRSF18 MIR6727 LOC100288175 TMEM88B AGRN LOC284600 FAM132A MRPL20 KLHL17 PERM1 HES4 PLEKHN1 ANKRD65 MIR429 LOC100130417 MIR200B CCNL2 CPSF3L
nsv544895 Chr.1:917392 - 1054900 on Build GRCh38 Loss LOC107985728 ISG15 KLHL17 SAMD11 PERM1 HES4 NOC2L PLEKHN1 LOC100130417 AGRN LOC284600
nsv1160644 Chr.1:939652 - 1220663 on Build GRCh38 Deletion LINC01342 MIR200A LOC105378948 ISG15 C1orf159 TNFRSF18 LOC100288175 TTLL10-AS1 AGRN SDF4 KLHL17 SAMD11 TTLL10 PERM1 TNFRSF4 HES4 NOC2L PLEKHN1 MIR429 MIR200B RNF223
nsv832980 Chr.1:848279 - 1007037 on Build GRCh38 Gain LOC107985728 KLHL17 SAMD11 FAM41C PERM1 HES4 NOC2L PLEKHN1 LOC100130417 LINC01128 LOC284600
nsv544898 Chr.1:924665 - 943937 on Build GRCh38 Gain LOC107985728 SAMD11

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More Information


Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:


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