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See other SAMD11 CNV Assays ›
Gene Symbol
SAMD11
Assay Reference Genome
Location

Chr.1:943194 on build GRCh38
Cytoband
1p36.33
Assay ID Hs03384237_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 148398

Gene Name:

 sterile alpha motif domain containing 11

Gene Aliases:

 MRS

Location:

 Chr.1:925741-944581 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 11 - Exon 12
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SAMD11 NM_152486.2 NP_689699.2
AK054643.1 BAB70781.1
BC024295.2 AAH24295.1
BC033213.1 AAH33213.1
JX093066.1
JX093067.1
JX093068.1
JX093069.1
JX093070.1
JX093071.1
JX093072.1
JX093073.1
JX093074.1
JX093075.1
JX093076.1
JX093077.1
JX093078.1 10 1700
JX093079.1
JX093080.1 10 1655
JX093081.1
JX093082.1 10 1652
JX093083.1 10 1652
JX093084.1 8 1376
JX093085.1
JX093086.1
JX093087.1
JX093088.1
JX093089.1
JX093090.1
JX093091.1
JX093092.1
JX093093.1
JX093094.1
JX093095.1
JX093096.1
JX093097.1
JX093098.1 5 1020
JX093099.1 11 1788
JX093100.1
JX093101.1
JX093102.1
JX093103.1
JX093104.1 8 1597
JX093105.1
JX093106.1
JX093107.1
JX093108.1
JX093109.1
JX093110.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
dgv15n54 Chr.1:934063 - 943937 on Build GRCh38 Loss SAMD11
esv2762302 Chr.1:914637 - 1106320 on Build GRCh38 Gain C1orf159 KLHL17 LOC100288175 NOC2L LOC100130417 RNF223 LOC284600 PLEKHN1 ISG15 HES4 SAMD11 AGRN LOC105378948 PERM1 LOC107985728
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss C1orf159 MMP23A MTND2P28 MIR200A DVL1 MIR1302-2 TTLL10-AS1 LOC105378947 HES4 OR4F5 SKI TMEM88B SDF4 MRPL20 LOC107984841 OR4F16 LOC102724312 WASH7P AURKAIP1 FNDC10 CALML6 TMEM52 FAM138A TNFRSF18 MIR200B OR4F29 VWA1 SAMD11 CPTP ACAP3 LOC107985728 UBE2J2 LOC100132287 CCNL2 LOC107985729 NOC2L LOC100130417 MIR6723 FAAP20 LOC729737 TMEM240 LOC100129534 ATAD3C MIR429 CDK11A ATAD3A NADK CPSF3L SLC35E2 MXRA8 ISG15 LOC105378949 LOC105378592 PERM1 LOC100506504 TTLL10 MMP23B SSU72 ATAD3B FAM41C LINC01128 FAM87B LOC105378591 LOC148413 LOC105378589 LOC105378948 GNB1 LOC100288175 DDX11L1 MIR6859-2 LOC100287934 RNF223 MIR6808 TAS1R3 PLEKHN1 ANKRD65 LINC01342 SLC35E2B CDK11B SCNN1D MIB2 LINC00115 KLHL17 PUSL1 B3GALT6 LOC100133331 MTND1P23 LOC100288069 MIR6727 LOC101928626 LOC102725121 FAM132A TNFRSF4 LOC100134822 MIR6859-1 LOC284600 CFAP74 MORN1 MIR6726 PRKCZ AGRN GABRD
nsv950451 Chr.1:899421 - 1094520 on Build GRCh38 Deletion C1orf159 KLHL17 LOC100288175 NOC2L LOC100130417 RNF223 LOC284600 PLEKHN1 ISG15 HES4 SAMD11 AGRN LOC105378948 PERM1 LOC107985728
nsv509035 Chr.1:891406 - 985724 on Build GRCh38 Insertion LOC284600 PLEKHN1 KLHL17 NOC2L LOC100130417 SAMD11 PERM1 LOC107985728
dgv8n54 Chr.1:925754 - 943937 on Build GRCh38 Loss SAMD11
nsv428334 Chr.1:874371 - 1220569 on Build GRCh38 Gain C1orf159 KLHL17 NOC2L LOC100130417 TTLL10 FAM41C MIR200A TTLL10-AS1 HES4 MIR429 LOC105378948 SDF4 LOC100288175 RNF223 TNFRSF4 LOC284600 PLEKHN1 LINC01342 TNFRSF18 ISG15 MIR200B SAMD11 AGRN PERM1 LOC107985728
dgv5n100 Chr.1:585989 - 1114424 on Build GRCh38 Gain C1orf159 KLHL17 NOC2L LOC100130417 MIR6723 LOC100133331 MTND1P23 MTND2P28 LOC100288069 FAM41C LINC01128 FAM87B LOC105378947 HES4 LOC105378948 LOC101928626 LOC100288175 LOC107984841 OR4F16 LOC100287934 RNF223 LOC284600 PLEKHN1 ISG15 SAMD11 AGRN LINC00115 PERM1 LOC107985728
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss C1orf159 TTLL10 MMP23A MMP23B SSU72 ATAD3B FAM41C LINC01128 MIR200A DVL1 FAM87B LOC148413 TTLL10-AS1 HES4 LOC105378948 TMEM88B SDF4 MRPL20 LOC100288175 LOC102724312 LOC100287934 RNF223 MIR6808 TAS1R3 AURKAIP1 PLEKHN1 ANKRD65 FNDC10 LINC01342 TNFRSF18 SLC35E2B MIR200B VWA1 CDK11B SCNN1D MIB2 SAMD11 CPTP LINC00115 ACAP3 LOC107985728 UBE2J2 KLHL17 CCNL2 LOC107985729 NOC2L LOC100130417 PUSL1 B3GALT6 LOC100288069 TMEM240 ATAD3C MIR429 CDK11A MIR6727 ATAD3A NADK CPSF3L FAM132A TNFRSF4 SLC35E2 MXRA8 LOC284600 ISG15 MIR6726 AGRN PERM1
nsv517709 Chr.1:817186 - 1275912 on Build GRCh38 Gain+Loss UBE2J2 C1orf159 KLHL17 NOC2L LOC100130417 TTLL10 B3GALT6 FAM41C LINC01128 MIR200A FAM87B TTLL10-AS1 HES4 MIR429 LOC105378948 SDF4 LOC100288175 FAM132A RNF223 TNFRSF4 LOC284600 PLEKHN1 LINC01342 TNFRSF18 ISG15 MIR200B SAMD11 AGRN LINC00115 PERM1 LOC107985728
nsv1013524 Chr.1:939510 - 1161955 on Build GRCh38 Gain C1orf159 KLHL17 LOC100288175 NOC2L RNF223 PLEKHN1 LINC01342 ISG15 HES4 SAMD11 AGRN LOC105378948 PERM1
dgv2n67 Chr.1:877618 - 1426500 on Build GRCh38 Gain UBE2J2 C1orf159 KLHL17 CCNL2 NOC2L LOC100130417 TTLL10 PUSL1 B3GALT6 MIR200A DVL1 LOC148413 TTLL10-AS1 HES4 MIR429 LOC105378948 TMEM88B MIR6727 SDF4 MRPL20 LOC100288175 CPSF3L FAM132A RNF223 MIR6808 TNFRSF4 MXRA8 TAS1R3 AURKAIP1 LOC284600 PLEKHN1 ANKRD65 LINC01342 TNFRSF18 ISG15 MIR200B MIR6726 SCNN1D SAMD11 CPTP AGRN PERM1 ACAP3 LOC107985728
nsv544895 Chr.1:917392 - 1054900 on Build GRCh38 Loss LOC284600 PLEKHN1 KLHL17 ISG15 NOC2L LOC100130417 HES4 SAMD11 AGRN PERM1 LOC107985728
nsv1160644 Chr.1:939652 - 1220663 on Build GRCh38 Deletion SDF4 C1orf159 KLHL17 LOC100288175 NOC2L TTLL10 RNF223 TNFRSF4 PLEKHN1 LINC01342 TNFRSF18 ISG15 MIR200A MIR200B TTLL10-AS1 HES4 MIR429 SAMD11 AGRN LOC105378948 PERM1
nsv832980 Chr.1:848279 - 1007037 on Build GRCh38 Gain LOC284600 PLEKHN1 FAM41C KLHL17 LINC01128 NOC2L LOC100130417 HES4 SAMD11 PERM1 LOC107985728
nsv544898 Chr.1:924665 - 943937 on Build GRCh38 Gain SAMD11 LOC107985728

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More Information


Set Membership:

 Intragenic Non-exonic DGV Variation

Panther Classification:


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