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Gene Symbol
SAMD11
Assay Reference Genome
Location

Chr.1:927795 on build GRCh38
Cytoband
1p36.33
Assay ID Hs04202835_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 148398

Gene Name:

 sterile alpha motif domain containing 11

Gene Aliases:

 MRS

Location:

 Chr.1:925741-944581 on Build GRCh38

Assay Gene Location:

 Within Intron 2
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SAMD11 NM_152486.2 NP_689699.2
CN342795.1
JX093066.1
JX093067.1
JX093068.1
JX093069.1
JX093070.1
JX093071.1
JX093072.1
JX093073.1
JX093074.1
JX093075.1
JX093076.1
JX093077.1
JX093078.1
JX093079.1
JX093080.1
JX093081.1
JX093082.1
JX093083.1
JX093084.1
JX093085.1
JX093086.1
JX093087.1
JX093088.1
JX093089.1
JX093090.1
JX093091.1
JX093092.1
JX093093.1
JX093094.1
JX093095.1
JX093096.1
JX093097.1
JX093098.1
JX093099.1
JX093100.1
JX093101.1
JX093102.1
JX093103.1
JX093104.1
JX093105.1
JX093106.1
JX093107.1
JX093108.1
JX093109.1
JX093110.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2762302 Chr.1:914637 - 1106320 on Build GRCh38 Gain LOC100130417 PLEKHN1 LOC107985728 RNF223 LOC284600 HES4 NOC2L SAMD11 ISG15 LOC105378948 AGRN PERM1 C1orf159 KLHL17 LOC100288175
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss ATAD3C MIB2 FAAP20 LOC107985728 LOC100133331 LOC100129534 ANKRD65 LINC01128 LOC105378591 PERM1 FNDC10 CALML6 LOC100287934 MTND1P23 SLC35E2 MIR6727 CCNL2 CPSF3L MRPL20 MTND2P28 ATAD3B MORN1 LOC148413 KLHL17 OR4F29 MIR1302-2 TTLL10-AS1 LOC105378947 OR4F5 UBE2J2 MMP23A FAM132A LINC01342 LOC729737 LOC101928626 LOC100288175 MIR429 WASH7P LOC105378592 LINC00115 MIR6859-1 NOC2L TNFRSF18 B3GALT6 ISG15 NADK AGRN SLC35E2B OR4F16 TMEM52 ACAP3 LOC284600 MIR6726 LOC100134822 DDX11L1 SSU72 MIR6859-2 TTLL10 DVL1 CFAP74 LOC100288069 TNFRSF4 RNF223 LOC107985729 HES4 ATAD3A SAMD11 LOC102724312 MIR6723 PRKCZ MXRA8 TMEM88B FAM41C LOC100130417 PLEKHN1 PUSL1 LOC100506504 CDK11A MIR6808 CDK11B FAM138A LOC107984841 SKI CPTP VWA1 MMP23B GNB1 C1orf159 FAM87B GABRD SDF4 MIR200B TMEM240 LOC105378949 MIR200A LOC105378589 LOC105378948 SCNN1D TAS1R3 AURKAIP1 LOC100132287 LOC102725121
nsv950451 Chr.1:899421 - 1094520 on Build GRCh38 Deletion LOC100130417 PLEKHN1 LOC107985728 RNF223 LOC284600 HES4 NOC2L SAMD11 ISG15 LOC105378948 AGRN PERM1 C1orf159 KLHL17 LOC100288175
nsv509035 Chr.1:891406 - 985724 on Build GRCh38 Insertion LOC100130417 PLEKHN1 LOC107985728 LOC284600 PERM1 NOC2L SAMD11 KLHL17
dgv8n54 Chr.1:925754 - 943937 on Build GRCh38 Loss SAMD11
nsv428334 Chr.1:874371 - 1220569 on Build GRCh38 Gain LOC100130417 PLEKHN1 LOC107985728 TTLL10-AS1 LOC284600 LINC01342 PERM1 C1orf159 LOC100288175 MIR429 TTLL10 TNFRSF4 RNF223 HES4 SDF4 MIR200B NOC2L SAMD11 TNFRSF18 MIR200A ISG15 LOC105378948 AGRN KLHL17 FAM41C
dgv5n100 Chr.1:585989 - 1114424 on Build GRCh38 Gain LOC100130417 PLEKHN1 LOC107985728 LOC100133331 LOC284600 LOC105378947 LOC107984841 LINC01128 PERM1 C1orf159 LOC100287934 LOC101928626 LOC100288175 MTND1P23 LOC100288069 RNF223 MTND2P28 HES4 LINC00115 FAM87B NOC2L SAMD11 MIR6723 ISG15 LOC105378948 AGRN OR4F16 KLHL17 FAM41C
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss ATAD3C ACAP3 MIB2 LOC107985728 LOC284600 MIR6726 ANKRD65 SSU72 LINC01128 PERM1 FNDC10 LOC100287934 TTLL10 DVL1 SLC35E2 MIR6727 LOC100288069 TNFRSF4 CCNL2 CPSF3L MRPL20 RNF223 LOC107985729 HES4 ATAD3B ATAD3A SAMD11 LOC102724312 LOC148413 MXRA8 TMEM88B KLHL17 FAM41C LOC100130417 PLEKHN1 PUSL1 CDK11A TTLL10-AS1 MIR6808 CDK11B UBE2J2 MMP23A FAM132A LINC01342 CPTP VWA1 MMP23B C1orf159 LOC100288175 MIR429 LINC00115 FAM87B SDF4 MIR200B NOC2L TMEM240 TNFRSF18 B3GALT6 MIR200A ISG15 LOC105378948 SCNN1D NADK TAS1R3 AURKAIP1 AGRN SLC35E2B
dgv1n111 Chr.1:690090 - 939522 on Build GRCh38 Duplication LOC100130417 LOC100288069 LOC107985728 LOC100133331 LOC284600 LINC00115 FAM87B LOC107984841 SAMD11 LINC01128 OR4F16 LOC100287934 FAM41C
nsv517709 Chr.1:817186 - 1275912 on Build GRCh38 Gain+Loss LOC100130417 PLEKHN1 LOC107985728 TTLL10-AS1 LOC284600 UBE2J2 FAM132A LINC01342 LINC01128 PERM1 C1orf159 LOC100288175 MIR429 TTLL10 TNFRSF4 RNF223 HES4 LINC00115 FAM87B SDF4 MIR200B NOC2L SAMD11 TNFRSF18 B3GALT6 MIR200A ISG15 LOC105378948 AGRN KLHL17 FAM41C
dgv3n111 Chr.1:783283 - 939522 on Build GRCh38 Duplication LOC100130417 LINC01128 LOC107985728 LOC284600 LINC00115 FAM87B SAMD11 LOC100287934 FAM41C
dgv2n67 Chr.1:877618 - 1426500 on Build GRCh38 Gain ACAP3 LOC100130417 PLEKHN1 PUSL1 LOC107985728 TTLL10-AS1 LOC284600 MIR6726 MIR6808 ANKRD65 UBE2J2 FAM132A LINC01342 CPTP PERM1 C1orf159 LOC100288175 MIR429 TTLL10 DVL1 MIR6727 TNFRSF4 CCNL2 CPSF3L MRPL20 RNF223 HES4 SDF4 MIR200B NOC2L SAMD11 TNFRSF18 B3GALT6 MIR200A LOC148413 ISG15 LOC105378948 SCNN1D TAS1R3 MXRA8 AURKAIP1 AGRN TMEM88B KLHL17
nsv544895 Chr.1:917392 - 1054900 on Build GRCh38 Loss LOC100130417 PLEKHN1 ISG15 LOC107985728 LOC284600 HES4 AGRN PERM1 NOC2L SAMD11 KLHL17
nsv832980 Chr.1:848279 - 1007037 on Build GRCh38 Gain LOC100130417 PLEKHN1 LINC01128 LOC107985728 LOC284600 HES4 PERM1 NOC2L SAMD11 KLHL17 FAM41C
nsv544897 Chr.1:924665 - 934930 on Build GRCh38 Gain+Loss LOC107985728 SAMD11

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More Information


Additional Information:

For this assay, SNP(s) [rs79585663] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:


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