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See other SAMD11 CNV Assays ›
Gene Symbol
SAMD11
Assay Reference Genome
Location

Chr.1:933205 on build GRCh38
Cytoband
1p36.33
Assay ID Hs04210927_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 148398

Gene Name:

 sterile alpha motif domain containing 11

Gene Aliases:

 MRS

Location:

 Chr.1:925741-944581 on Build GRCh38

Assay Gene Location:

 Within Intron 4
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SAMD11 NM_152486.2 NP_689699.2
CN293867.1
CN342795.1
JX093066.1
JX093067.1
JX093068.1
JX093069.1
JX093070.1
JX093071.1
JX093072.1
JX093073.1
JX093074.1
JX093075.1
JX093076.1
JX093077.1
JX093078.1
JX093079.1
JX093080.1
JX093081.1
JX093082.1
JX093083.1
JX093084.1
JX093085.1
JX093086.1
JX093087.1
JX093088.1
JX093089.1
JX093090.1
JX093091.1
JX093092.1
JX093093.1
JX093094.1
JX093095.1
JX093096.1
JX093097.1
JX093098.1
JX093099.1
JX093100.1
JX093101.1
JX093102.1
JX093103.1
JX093104.1
JX093105.1
JX093106.1
JX093107.1
JX093108.1
JX093109.1
JX093110.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2762302 Chr.1:914637 - 1106320 on Build GRCh38 Gain AGRN C1orf159 LOC105378948 NOC2L PLEKHN1 LOC284600 KLHL17 HES4 PERM1 LOC100288175 LOC100130417 ISG15 SAMD11 LOC107985728 RNF223
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss MORN1 C1orf159 NOC2L TTLL10 CFAP74 LOC105378949 OR4F16 LOC100288069 FAM138A MTND1P23 LOC101928626 CCNL2 MIR6726 LOC100287934 LOC105378947 WASH7P DVL1 ANKRD65 LOC729737 LOC100129534 LOC100288175 LOC105378591 ATAD3B MMP23B LOC107985728 LOC100133331 SCNN1D NADK ISG15 OR4F5 SLC35E2B FAM41C CPTP MMP23A LOC100506504 LOC102725121 LOC148413 LOC105378592 MIR200A SSU72 AURKAIP1 TNFRSF18 ACAP3 PRKCZ ATAD3A VWA1 SKI PUSL1 GABRD MRPL20 LINC01128 CDK11A B3GALT6 FAM87B FAAP20 TTLL10-AS1 LINC01342 FAM132A GNB1 MXRA8 AGRN MIR6723 MIR6859-1 LOC100132287 CPSF3L PLEKHN1 KLHL17 PERM1 LOC100134822 TAS1R3 LOC105378589 SLC35E2 MIR6859-2 LOC107985729 TNFRSF4 LOC284600 TMEM240 DDX11L1 MIB2 MIR6727 LOC102724312 UBE2J2 MIR200B LOC100130417 LOC107984841 MIR6808 RNF223 CALML6 LINC00115 FNDC10 CDK11B OR4F29 LOC105378948 MIR1302-2 HES4 ATAD3C TMEM88B MTND2P28 TMEM52 SAMD11 MIR429 SDF4
dgv10n54 Chr.1:929558 - 935265 on Build GRCh38 Gain+Loss SAMD11
nsv950451 Chr.1:899421 - 1094520 on Build GRCh38 Deletion AGRN C1orf159 LOC105378948 NOC2L PLEKHN1 LOC284600 KLHL17 HES4 PERM1 LOC100288175 LOC100130417 ISG15 SAMD11 LOC107985728 RNF223
nsv509035 Chr.1:891406 - 985724 on Build GRCh38 Insertion LOC100130417 NOC2L PLEKHN1 LOC284600 KLHL17 SAMD11 LOC107985728 PERM1
dgv8n54 Chr.1:925754 - 943937 on Build GRCh38 Loss SAMD11
nsv428334 Chr.1:874371 - 1220569 on Build GRCh38 Gain TNFRSF4 C1orf159 NOC2L TTLL10 LOC284600 MIR200B LOC100130417 TTLL10-AS1 ISG15 LINC01342 FAM41C RNF223 AGRN LOC105378948 PLEKHN1 KLHL17 MIR200A HES4 TNFRSF18 PERM1 LOC100288175 SAMD11 LOC107985728 MIR429 SDF4
dgv5n100 Chr.1:585989 - 1114424 on Build GRCh38 Gain C1orf159 NOC2L LOC284600 LINC01128 FAM87B OR4F16 LOC100130417 ISG15 LOC107984841 LOC100288069 FAM41C RNF223 LINC00115 MTND1P23 AGRN LOC101928626 MIR6723 LOC105378948 PLEKHN1 KLHL17 LOC100287934 LOC105378947 HES4 PERM1 LOC100288175 MTND2P28 SAMD11 LOC107985728 LOC100133331
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss C1orf159 MRPL20 NOC2L TTLL10 LINC01128 CDK11A B3GALT6 FAM87B TTLL10-AS1 LINC01342 FAM132A LOC100288069 MXRA8 AGRN CCNL2 MIR6726 CPSF3L PLEKHN1 KLHL17 LOC100287934 PERM1 DVL1 ANKRD65 LOC100288175 ATAD3B TAS1R3 MMP23B SLC35E2 LOC107985728 SCNN1D LOC107985729 TNFRSF4 LOC284600 TMEM240 MIB2 MIR6727 LOC102724312 NADK UBE2J2 MIR200B LOC100130417 ISG15 SLC35E2B FAM41C CPTP MIR6808 MMP23A RNF223 LINC00115 FNDC10 CDK11B LOC148413 LOC105378948 MIR200A SSU72 AURKAIP1 HES4 TNFRSF18 ATAD3C ACAP3 ATAD3A TMEM88B VWA1 SAMD11 PUSL1 MIR429 SDF4
dgv1n111 Chr.1:690090 - 939522 on Build GRCh38 Duplication LOC284600 LINC01128 LOC100287934 FAM87B OR4F16 LOC100130417 LOC107984841 SAMD11 LOC100288069 FAM41C LOC107985728 LOC100133331 LINC00115
nsv517709 Chr.1:817186 - 1275912 on Build GRCh38 Gain+Loss TNFRSF4 C1orf159 NOC2L TTLL10 LOC284600 LINC01128 B3GALT6 UBE2J2 FAM87B MIR200B LOC100130417 TTLL10-AS1 ISG15 LINC01342 FAM132A FAM41C RNF223 LINC00115 AGRN LOC105378948 PLEKHN1 KLHL17 MIR200A HES4 TNFRSF18 PERM1 LOC100288175 SAMD11 LOC107985728 MIR429 SDF4
dgv3n111 Chr.1:783283 - 939522 on Build GRCh38 Duplication LOC100130417 LOC284600 SAMD11 FAM41C LINC01128 LOC100287934 LOC107985728 LINC00115 FAM87B
dgv2n67 Chr.1:877618 - 1426500 on Build GRCh38 Gain TNFRSF4 C1orf159 MRPL20 NOC2L TTLL10 LOC284600 MIR6727 B3GALT6 UBE2J2 MIR200B LOC100130417 TTLL10-AS1 ISG15 LINC01342 FAM132A CPTP MIR6808 MXRA8 RNF223 AGRN LOC148413 CCNL2 LOC105378948 MIR6726 CPSF3L PLEKHN1 KLHL17 MIR200A AURKAIP1 HES4 TNFRSF18 PERM1 DVL1 ANKRD65 ACAP3 LOC100288175 TMEM88B TAS1R3 SAMD11 PUSL1 LOC107985728 MIR429 SCNN1D SDF4
nsv544895 Chr.1:917392 - 1054900 on Build GRCh38 Loss AGRN LOC100130417 ISG15 NOC2L PLEKHN1 LOC284600 KLHL17 SAMD11 HES4 LOC107985728 PERM1
nsv832980 Chr.1:848279 - 1007037 on Build GRCh38 Gain LOC100130417 NOC2L PLEKHN1 LOC284600 KLHL17 SAMD11 FAM41C LINC01128 HES4 LOC107985728 PERM1
nsv544897 Chr.1:924665 - 934930 on Build GRCh38 Gain+Loss SAMD11 LOC107985728

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More Information


Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:


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