Rn00565995_m1

• Gene Symbol: Hcrt
• Gene Name: hypocretin
• Gene Aliases: orexin-A
• Chromosome Location: Chr.10: 88669216 - 88670430 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Hcrt
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_013179.2	NP_037311.1	1 - 2	108		148
GenBank mRNA	AF019565.1	-	1 - 2	113		148
	AF041241.1	-	1 - 2	112		148

More Information

Additional Information:

This assay is in the 5'UTR region of the AF019565.1, AF041241.1, NM_013179.2 transcripts.

• Set Membership: Ambion siRNA available, Amplicon length greater than or equal to 101, 3' Most, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Hcrt

Gene Ontology Categories:

Process(es)

temperature homeostasis
behavioral fear response
phospholipase C-activating G-protein coupled receptor signaling pathway
positive regulation of cytosolic calcium ion concentration
protein kinase C-activating G-protein coupled receptor signaling pathway
neuropeptide signaling pathway
feeding behavior
negative regulation of DNA replication
eating behavior
negative regulation of potassium ion transport
regulation of neurotransmitter secretion
release of sequestered calcium ion into cytosol
positive regulation of calcium ion transport
negative regulation of transmission of nerve impulse
positive regulation of transmission of nerve impulse
excitatory postsynaptic potential

Function(s)

neuropeptide hormone activity
type 1 hypocretin receptor binding
type 2 hypocretin receptor binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_42_P500675	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	719711	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_42_P500675	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_42_P500675	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_42_P500675	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_42_P500675	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10747483	-	-
Affymetrix Rat Gene 1.0 ST Array	10747484	-	-
Affymetrix Rat Gene 1.1 ST Array	10747482	-	-
Rat Genome 230 2.0 Array	1387163_PM_at	-	-
Rat Genome 230 2.0 Array	1387163_at	-	-
Affymetrix HT Rat Focus Array	1387163_at	-	-
Affymetrix HT Rat Focus Array	1387163_PM_at	-	-
Affymetrix Rat Clariom S Assay	PSR1000034199.rn.1	TC1000003809.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1000034201.rn.1	TC1000003809.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1000034200.rn.1	TC1000003809.rn.1	RTA TC
Rat Expression Set 230	1387163_PM_at	-	-
Rat Expression Set 230	1387163_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10747482	-	-
Rat Genome U34 Set	AF019565_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	21412873	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1355146	-	-
RatRef-12 Expression BeadChip	ILMN_53349	-	-