Rn00583815_m1 Best Coverage

• Gene Symbol: Atp7a
• Gene Name: ATPase, Cu++ transporting, alpha polypeptide
• Gene Aliases: Mnk
• Chromosome Location: Chr.X: 77076087 - 77193644 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Atp7a
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_052803.2	NP_434690.1	5 - 6	1704		59
	XM_006256995.2	XP_006257057.1	6 - 7	1871		59
	XM_006256997.2	XP_006257059.1	6 - 7	1868		59
	XM_008773334.1	XP_008771556.1	6 - 7	1812		59
GenBank mRNA	L28172.1	-	2 - 3	226		59
	U59245.1	-	5 - 6	1709		59

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0X00000713.rn.1

• Set Membership: Ambion siRNA available, Amplicon length less than or equal to 70, Ion Channel, Transporter, Recommended Assay, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Atp7a

Panther Classification:

Molecular Function -

primary active transporter

Gene Ontology Categories:

Process(es)

blood vessel development
in utero embryonic development
release of cytochrome c from mitochondria
blood vessel remodeling
regulation of oxidative phosphorylation
tryptophan metabolic process
tyrosine metabolic process
catecholamine metabolic process
copper ion transport
cellular copper ion homeostasis
mitochondrion organization
lactation
locomotory behavior
response to iron(III) ion
response to zinc ion
detoxification of copper ion
regulation of gene expression
copper ion import
plasma membrane copper ion transport
peptidyl-lysine modification
removal of superoxide radicals
cerebellar Purkinje cell differentiation
pyramidal neuron development
central nervous system neuron development
metal ion transport
extracellular matrix organization
collagen fibril organization
hair follicle morphogenesis
hindlimb morphogenesis
T-helper cell differentiation
epinephrine metabolic process
norepinephrine metabolic process
dopamine metabolic process
norepinephrine biosynthetic process
serotonin metabolic process
positive regulation of catalytic activity
negative regulation of catalytic activity
pigmentation
negative regulation of neuron apoptotic process
skin development
ATP metabolic process
response to copper ion
elastic fiber assembly
lung alveolus development
neuron projection morphogenesis
dendrite morphogenesis
cartilage development
positive regulation of oxidoreductase activity
elastin biosynthetic process
copper ion export

Function(s)

molecular_function
copper-exporting ATPase activity
copper ion transmembrane transporter activity
copper ion binding
ATP binding
superoxide dismutase copper chaperone activity
copper-dependent protein binding
metal ion binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_43_P12743	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	783941	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	786719	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	441153	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	701544	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	351094	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	635601	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	207518	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	887108	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	244353	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	874712	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	971043	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	310880	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	523212	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	746065	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	335769	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	6917	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	692289	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	735499	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	926661	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	60185	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	282072	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	844265	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	372384	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	486880	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	225854	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	793919	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	360537	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	804910	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	557542	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	777556	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	869855	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	807719	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	400996	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	878195	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	113293	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	591351	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	68953	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	79639	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	365793	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	62209	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	16371	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	57595	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	84	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	51351	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	13245	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_43_P12743	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_43_P12743	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_43_P12743	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P520265	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	29978	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	21501	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	94459	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	56731	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	92413	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10934603	-	-
Affymetrix Rat Gene 1.0 ST Array	10934591	-	-
Affymetrix Rat Gene 1.0 ST Array	10934595	-	-
Affymetrix Rat Gene 1.0 ST Array	10934596	-	-
Affymetrix Rat Gene 1.0 ST Array	10934587	-	-
Affymetrix Rat Gene 1.0 ST Array	10934588	-	-
Affymetrix Rat Gene 1.0 ST Array	10934604	-	-
Affymetrix Rat Gene 1.0 ST Array	10934601	-	-
Affymetrix Rat Gene 1.0 ST Array	10934589	-	-
Affymetrix Rat Gene 1.0 ST Array	10934586	-	-
Affymetrix Rat Gene 1.0 ST Array	10934590	-	-
Affymetrix Rat Gene 1.0 ST Array	10934593	-	-
Affymetrix Rat Gene 1.0 ST Array	10934592	-	-
Affymetrix Rat Gene 1.0 ST Array	10934607	-	-
Affymetrix Rat Gene 1.0 ST Array	10934597	-	-
Affymetrix Rat Gene 1.0 ST Array	10934599	-	-
Affymetrix Rat Gene 1.0 ST Array	10934598	-	-
Affymetrix Rat Gene 1.0 ST Array	10934600	-	-
Affymetrix Rat Gene 1.0 ST Array	10934605	-	-
Affymetrix Rat Gene 1.0 ST Array	10934602	-	-
Affymetrix Rat Gene 1.0 ST Array	10934606	-	-
Affymetrix Rat Gene 1.0 ST Array	10934594	-	-
Affymetrix Rat Gene 1.1 ST Array	10934585	-	-
Rat Genome 230 2.0 Array	1369342_at	-	-
Rat Genome 230 2.0 Array	1369342_PM_at	-	-
Affymetrix HT Rat Focus Array	1369342_at	-	-
Affymetrix HT Rat Focus Array	1369342_PM_at	-	-
Affymetrix Rat Clariom S Assay	PSR0X00004510.rn.1	TC0X00000713.rn.1	RTA TC
Rat Expression Set 230	1369342_PM_at	-	-
Rat Expression Set 230	1369342_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10934585	-	-
Rat Genome U34 Set	U59245_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	22013353	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1349553	-	-
RatRef-12 Expression BeadChip	ILMN_53897	-	-