Rn00821513_m1 Best Coverage

• Gene Symbol: Tdg
• Gene Name: thymine-DNA glycosylase
• Gene Aliases: -
• Chromosome Location: Chr.7: 27194000 - 27213676 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Tdg
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_053729.1	NP_446181.1	7 - 8	833		80
GenBank mRNA	AY026945.1	-	7 - 8	833		80
	BC129088.1	-	7 - 8	850	8362408	80

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0700002400.rn.1

• Set Membership: Ambion siRNA available, Amplicon length between 71 and 85, Mammalian Gene Collection, Recommended Assay, Rattus norvegicus, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Tdg

Panther Classification:

Molecular Function -

DNA metabolism protein, DNA glycosylase, nucleic acid metabolism protein

Gene Ontology Categories:

Process(es)

negative regulation of transcription from RNA polymerase II promoter
base-excision repair
mismatch repair
transcription from RNA polymerase II promoter
negative regulation of protein binding
negative regulation of chromatin binding
regulation of gene expression, epigenetic
DNA demethylation

Function(s)

RNA polymerase II transcription cofactor activity
double-stranded DNA binding
protein kinase C binding
transcription factor binding
pyrimidine-specific mismatch base pair DNA N-glycosylase activity
hydrolase activity, hydrolyzing N-glycosyl compounds
DNA N-glycosylase activity
protein domain specific binding
mismatched DNA binding
SUMO binding
protein homodimerization activity
structure-specific DNA binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Clariom S Assay	PSR0700019001.rn.1	TC0700002400.rn.1	RTA TC