Rn01102259_m1 Best Coverage

• Gene Symbol: Bcl11b
• Gene Name: B-cell CLL/lymphoma 11B (zinc finger protein)
• Gene Aliases: Ctip2
• Chromosome Location: Chr.6: 131834097 - 131926438 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Bcl11b
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001277288.1	NP_001264217.1	2 - 3	426		66
	XM_006240540.2	XP_006240602.1	2 - 3	589		66
GenBank mRNA	JF520428.1	-	2 - 3	426		66

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0600003137.rn.1

• Set Membership: Amplicon length less than or equal to 70, 3' Most, Recommended Assay, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Panther Classification:

Molecular Function -

DNA-binding transcription factor, zinc finger transcription factor, C2H2 zinc finger transcription factor, gene-specific transcriptional regulator

Gene Ontology Categories:

Process(es)

keratinocyte development
epithelial cell morphogenesis
transcription from RNA polymerase II promoter
axonogenesis
negative regulation of cell proliferation
post-embryonic development
regulation of gene expression
regulation of keratinocyte proliferation
regulation of lipid metabolic process
striatal medium spiny neuron differentiation
commitment of neuronal cell to specific neuron type in forebrain
central nervous system neuron differentiation
post-embryonic camera-type eye development
T cell differentiation in thymus
T cell receptor V(D)J recombination
odontogenesis of dentin-containing tooth
negative regulation of apoptotic process
positive T cell selection
skin development
regulation of neuron differentiation
positive regulation of transcription from RNA polymerase II promoter
alpha-beta T cell differentiation
thymus development
olfactory bulb axon guidance

Function(s)

RNA polymerase II core promoter proximal region sequence-specific DNA binding
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
sequence-specific DNA binding
metal ion binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Clariom S Assay	PSR0600022293.rn.1	TC0600003137.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0600022296.rn.1	TC0600003137.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0600022291.rn.1	TC0600003137.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0600022290.rn.1	TC0600003137.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0600022295.rn.1	TC0600003137.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0600022299.rn.1	TC0600003137.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0600022289.rn.1	TC0600003137.rn.1	RTA TC

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	21975434	-	-