Rn01433701_m1 Best Coverage

• Gene Symbol: Lims1
• Gene Name: LIM and senescent cell antigen-like domains 1
• Gene Aliases: Pinch1, RGD1560732
• Chromosome Location: Chr.20: 27895983 - 28004767 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Lims1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001145456.1	NP_001138928.1	2 - 3	323		91
	XM_006256385.2	XP_006256447.1	2 - 3	2225		91
	XM_006256386.2	XP_006256448.1	2 - 3	2225		91
	XM_006256387.2	XP_006256449.1	2 - 3	2222		91
	XM_006256388.2	XP_006256450.1	2 - 3	2089		91
	XM_006256389.2	XP_006256451.1	2 - 3	316		91
	XM_006256390.2	XP_006256452.1	2 - 3	1896		91
	XM_006256391.2	XP_006256453.1	2 - 3	1895		91
GenBank mRNA	FJ640984.1	-	2 - 3	323		91
	FJ640985.1	-	2 - 3	402		91
	FQ222665.1	-	2 - 3	411		91

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC2000000629.rn.1

• Set Membership: Amplicon length between 86 and 100, Recommended Assay, Rattus norvegicus, Probe spans exons

Panther Classification:

Molecular Function -

cell junction protein

Gene Ontology Categories:

Process(es)

epithelial to mesenchymal transition
cell-matrix adhesion
establishment or maintenance of cell polarity
positive regulation of gene expression
positive regulation of cell-substrate adhesion
single organismal cell-cell adhesion
chordate embryonic development
negative regulation of apoptotic process
positive regulation of GTPase activity
establishment of protein localization
cell-cell junction organization
negative regulation of transcription, DNA-templated
regulation of epithelial cell proliferation
negative regulation of epithelial cell proliferation
protein heterooligomerization
positive regulation of focal adhesion assembly
cellular response to transforming growth factor beta stimulus
positive regulation of substrate adhesion-dependent cell spreading
negative regulation of neural precursor cell proliferation
negative regulation of hepatocyte proliferation
positive regulation of integrin-mediated signaling pathway

Function(s)

zinc ion binding
protein kinase binding
protein domain specific binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Clariom S Assay	PSR2000005527.rn.1	TC2000000629.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR2000005526.rn.1	TC2000000629.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR2000005531.rn.1	TC2000000629.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR2000005532.rn.1	TC2000000629.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR2000005530.rn.1	TC2000000629.rn.1	RTA TC