Rn01435384_m1 Best Coverage

• Gene Symbol: Phf2
• Gene Name: PHD finger protein 2
• Gene Aliases: -
• Chromosome Location: Chr.17: 16240458 - 16274626 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Phf2
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001107342.1	NP_001100812.1	4 - 5	582		61
	XM_006253729.2	XP_006253791.1	5 - 6	2604		61

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC1700000289.rn.1

• Set Membership: Amplicon length less than or equal to 70, Recommended Assay, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Gene Ontology Categories:

Process(es)

protein demethylation
histone H3-K9 demethylation
negative regulation of chromatin silencing at rDNA

Function(s)

transcription coactivator activity
iron ion binding
zinc ion binding
histone demethylase activity
histone demethylase activity (H3-K9 specific)
methylated histone binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_42_P464092	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	107530	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	95108	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	740340	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	321825	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	405730	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	273260	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	705402	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	392641	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	926017	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	761794	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	3631	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	621134	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	698948	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	105240	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	156019	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	258737	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	816743	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	171950	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	37237	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	78320	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	261423	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	691499	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	736974	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	635655	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	15739	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	59494	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	171535	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	107390	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	176259	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_42_P464092	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_42_P464092	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_42_P464092	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P206170	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	26447	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	15449	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10794418	-	-
Affymetrix Rat Gene 1.0 ST Array	10794422	-	-
Affymetrix Rat Gene 1.0 ST Array	10794419	-	-
Affymetrix Rat Gene 1.0 ST Array	10794426	-	-
Affymetrix Rat Gene 1.0 ST Array	10794414	-	-
Affymetrix Rat Gene 1.0 ST Array	10794424	-	-
Affymetrix Rat Gene 1.0 ST Array	10794415	-	-
Affymetrix Rat Gene 1.0 ST Array	10794427	-	-
Affymetrix Rat Gene 1.0 ST Array	10794425	-	-
Affymetrix Rat Gene 1.0 ST Array	10794423	-	-
Affymetrix Rat Gene 1.0 ST Array	10794410	-	-
Affymetrix Rat Gene 1.0 ST Array	10794412	-	-
Affymetrix Rat Gene 1.0 ST Array	10794420	-	-
Affymetrix Rat Gene 1.0 ST Array	10794421	-	-
Affymetrix Rat Gene 1.0 ST Array	10794417	-	-
Affymetrix Rat Gene 1.0 ST Array	10794428	-	-
Affymetrix Rat Gene 1.0 ST Array	10794416	-	-
Affymetrix Rat Gene 1.0 ST Array	10794413	-	-
Affymetrix Rat Gene 1.0 ST Array	10794429	-	-
Affymetrix Rat Gene 1.1 ST Array	10794409	-	-
Rat Genome 230 2.0 Array	1390103_at	-	-
Rat Genome 230 2.0 Array	1390103_PM_at	-	-
Affymetrix HT Rat Focus Array	1390103_at	-	-
Affymetrix HT Rat Focus Array	1390103_PM_at	-	-
Affymetrix Rat Clariom S Assay	PSR1700002294.rn.1	TC1700000289.rn.1	RTA TC
Rat Expression Set 230	1390103_PM_at	-	-
Rat Expression Set 230	1390103_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10794409	-	-
Rat Genome U34 Set	rc_AI169319_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	22412515	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1355601	-	-