Rn01766292_m1 Best Coverage

• Gene Symbol: Hif1an
• Gene Name: hypoxia-inducible factor 1, alpha subunit inhibitor
• Gene Aliases: -
• Chromosome Location: Chr.1: 264309214 - 264319269 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Hif1an
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001113749.1	NP_001107221.1	4 - 5	734		74
GenBank mRNA	BC158810.1	-	4 - 5	734	7368955	74

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0100003684.rn.1

• Set Membership: Amplicon length between 71 and 85, Mammalian Gene Collection, Recommended Assay, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Gene Ontology Categories:

Process(es)

biological_process
peptidyl-histidine hydroxylation
peptidyl-aspartic acid hydroxylation
peptidyl-asparagine hydroxylation
positive regulation of myoblast differentiation
negative regulation of Notch signaling pathway
oxidation-reduction process
negative regulation of transcription from RNA polymerase II promoter in response to hypoxia

Function(s)

molecular_function
Notch binding
iron ion binding
zinc ion binding
oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
carboxylic acid binding
peptidyl-histidine dioxygenase activity
peptidyl-asparagine 3-dioxygenase activity
protein homodimerization activity
cofactor binding
NF-kappaB binding
ankyrin repeat binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Clariom S Assay	PSR0100029936.rn.1	TC0100003684.rn.1	RTA TC

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	21348165	-	-