Rn01766978_m1 Best Coverage

• Gene Symbol: Smad6
• Gene Name: SMAD family member 6
• Gene Aliases: -
• Chromosome Location: Chr.8: 68897746 - 68967219 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Smad6
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001109002.2	NP_001102472.1	2 - 3	877		134
	XM_006243241.2	XP_006243303.1	2 - 3	1988		134
	XM_006243242.2	XP_006243304.1	3 - 4	1905		134

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0800002742.rn.1

• Set Membership: Amplicon length greater than or equal to 101, Recommended Assay, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Panther Classification:

Molecular Function -

DNA-binding transcription factor, gene-specific transcriptional regulator

Gene Ontology Categories:

Process(es)

ureteric bud development
transcription, DNA-templated
immune response
transforming growth factor beta receptor signaling pathway
zygotic specification of dorsal/ventral axis
negative regulation of cell proliferation
negative regulation of SMAD protein complex assembly
BMP signaling pathway
negative regulation of transforming growth factor beta receptor signaling pathway
negative regulation of BMP signaling pathway
cell-substrate adhesion
response to laminar fluid shear stress
intracellular signal transduction
negative regulation of apoptotic process
response to estrogen
fat cell differentiation
negative regulation of pathway-restricted SMAD protein phosphorylation

Function(s)

RNA polymerase II core promoter proximal region sequence-specific DNA binding
molecular_function
chromatin binding
transcription factor activity, sequence-specific DNA binding
transforming growth factor beta receptor, inhibitory cytoplasmic mediator activity
ubiquitin protein ligase binding
type I transforming growth factor beta receptor binding
identical protein binding
transcription regulatory region DNA binding
co-SMAD binding
I-SMAD binding
R-SMAD binding
type I activin receptor binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_64_P068152	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	450717	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	585171	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	753361	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	145533	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	867485	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	337616	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	677137	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	140514	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	966055	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	438081	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	508456	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	223938	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	578985	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	30820	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	24282	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	963178	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	506843	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	428075	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	271151	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	708307	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	532408	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	178267	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	952946	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	740990	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	891790	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	835608	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	961059	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	596899	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	621219	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	156872	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	967720	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	955569	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	672976	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	558574	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	310258	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	330158	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	818404	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	653724	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	494170	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	862186	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	162120	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	615691	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	109082	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	773448	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	266358	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	473723	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	777317	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	894584	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	100734	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	486887	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	224476	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	383617	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	636879	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	174339	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	115439	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	96739	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	64574	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	50561	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	115461	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	45151	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	50988	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	138306	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P068152	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P068152	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_64_P068152	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P183134	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	68861	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	37085	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10918187	-	-
Affymetrix Rat Gene 1.0 ST Array	10918190	-	-
Affymetrix Rat Gene 1.0 ST Array	10918189	-	-
Affymetrix Rat Gene 1.0 ST Array	10918188	-	-
Affymetrix Rat Gene 1.1 ST Array	10918186	-	-
Rat Genome 230 2.0 Array	1375121_at	-	-
Rat Genome 230 2.0 Array	1375121_PM_at	-	-
Rat Genome 230 2.0 Array	1377467_at	-	-
Rat Genome 230 2.0 Array	1385928_at	-	-
Rat Genome 230 2.0 Array	1394025_at	-	-
Rat Genome 230 2.0 Array	1385928_PM_at	-	-
Rat Genome 230 2.0 Array	1377467_PM_at	-	-
Rat Genome 230 2.0 Array	1394025_PM_at	-	-
Affymetrix HT Rat Focus Array	1385928_PM_at	-	-
Affymetrix HT Rat Focus Array	1394025_PM_at	-	-
Affymetrix HT Rat Focus Array	1375121_PM_at	-	-
Affymetrix HT Rat Focus Array	1377467_at	-	-
Affymetrix HT Rat Focus Array	1385928_at	-	-
Affymetrix HT Rat Focus Array	1394025_at	-	-
Affymetrix HT Rat Focus Array	1377467_PM_at	-	-
Affymetrix HT Rat Focus Array	1375121_at	-	-
Affymetrix Rat Clariom S Assay	PSR0800022284.rn.1	TC0800002742.rn.1	RTA TC
Rat Expression Set 230	1377467_at	-	-
Rat Expression Set 230	1375121_at	-	-
Rat Expression Set 230	1375121_PM_at	-	-
Rat Expression Set 230	1377467_PM_at	-	-
Rat Expression Set 230	1394025_PM_at	-	-
Rat Expression Set 230	1394025_at	-	-
Rat Expression Set 230	1385928_PM_at	-	-
Rat Expression Set 230	1385928_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10918186	-	-
Rat Genome U34 Set	rc_AA963778_at	-	-
Rat Genome U34 Set	rc_AA997044_at	-	-
Rat Genome U34 Set	rc_AI175564_at	-	-
Rat Genome U34 Set	rc_AI136466_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	21950859	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1367741	-	-