Name: [Hs03851769_s1] [HMGCS1]
Creator: Thermo Fisher Scientific
Keywords: [HMGCS1] Assay, [3-hydroxy-3-methylglutaryl-CoA synthase 1] Assay

Assay Details

Gene Symbol: HMGCS1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001098272.2	NP_001091742.1	11	5117		86
	NM_001324219.1	NP_001311148.1	10	5104		86
	NM_001324220.1	NP_001311149.1	11	5137		86
	NM_001324222.1	NP_001311151.1	10	4991		86
	NM_001324223.1	NP_001311152.1	9	4932		86
	NM_001324224.1	NP_001311153.1	10	5011		86
	NM_002130.7	NP_002121.4	10	5058		86

Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	Transcript Location	Amplicon Length
GenBankmRNA	AL534450.2	-	1		Chr. 5 - 43287483 - 43288452 [+] on Build GRCh38	86
GenBankmRNA	AI051937.1	-	1		Chr. 5 - 43287472 - 43288004 [+] on Build GRCh38	86
GenBankmRNA	BQ184409.1	-	1		Chr. 5 - 43287470 - 43288226 [+] on Build GRCh38	86
GenBankmRNA	BQ189002.1	-	1	430	Chr. 5 - 43287601 - 43288232 [-] on Build GRCh38	86
GenBankmRNA	CR605684.1	-	1	1552	Chr. 5 - 43287699 - 43289354 [-] on Build GRCh38	86

Adjacent Gene Details

	Gene name	Gene Symbol	Alias	Distance	Relative Direction	Location Chromsome
Upstream	NIM1 serine/threonine protein kinase	NIM1K	NIM1	-6.8kb	Anti-sense	Chr. 5 - 43192054 - 43280850 on NCBI Build GRCh38
Downstream	C-C motif chemokine ligand 28	CCL28	CCK1, MEC, SCYA28	67.6kb	Sense	Chr. 5 - 43356972 - 43412391 on NCBI Build GRCh38

More Information

Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC0500010635.hg.1

Set Membership:

Ambion siRNA available

Amplicon length between 86 and 100

3' Most

Detect Genomic DNA

Homo sapiens

Both primers and probe map within a single exon

Matching Ambion siRNAs:

Click here to find siRNAs for Gene HMGCS1

Gene Ontology Categories:

Function(s) Process(es)

MicroArray Probes:

Affymetrix

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Transcriptome Array 2.0	TC0500007294.hg.1	ENST00000565748.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0500007294.hg.1	ENST00000565748.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0500007294.hg.1	ENST00000565748.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0500007294.hg.1	ENST00000569313.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0500007294.hg.1	ENST00000569313.1	Ensembl
Affymetrix Human Clariom D Assay	TC0500007294.hg.1	ENST00000565748.1	Ensembl
Affymetrix Human Clariom D Assay	TC0500007294.hg.1	ENST00000565748.1	Ensembl
Affymetrix Human Clariom D Assay	TC0500007294.hg.1	ENST00000565748.1	Ensembl
Affymetrix Human Clariom D Assay	TC0500007294.hg.1	ENST00000569313.1	Ensembl
Affymetrix Human Clariom D Assay	TC0500007294.hg.1	ENST00000569313.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0500174243.hg.1	NM_001098272.2	Refseq
Affymetrix Human Clariom D Assay	PSR0500174243.hg.1	NM_002130.7	Refseq
Affymetrix Human Clariom D Assay	PSR0500174243.hg.1	NM_001098272.2	Refseq
Affymetrix Human Clariom D Assay	PSR0500174243.hg.1	NM_002130.7	Refseq
Affymetrix Human Clariom D Assay	PSR0500174243.hg.1	TC0500010635.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR0500174241.hg.1	NM_001098272.2	Refseq
Affymetrix Human Clariom D Assay	PSR0500174241.hg.1	NM_002130.7	Refseq
Affymetrix Human Clariom D Assay	PSR0500174241.hg.1	NM_001098272.2	Refseq
Affymetrix Human Clariom D Assay	PSR0500174241.hg.1	NM_002130.7	Refseq
Affymetrix Human Clariom D Assay	PSR0500174241.hg.1	TC0500010635.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR0500174242.hg.1	NM_001098272.2	Refseq
Affymetrix Human Clariom D Assay	PSR0500174242.hg.1	NM_002130.7	Refseq
Affymetrix Human Clariom D Assay	PSR0500174242.hg.1	NM_001098272.2	Refseq
Affymetrix Human Clariom D Assay	PSR0500174242.hg.1	NM_002130.7	Refseq
Affymetrix Human Clariom D Assay	PSR0500174242.hg.1	TC0500010635.hg.1	Clariom D TC

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Catalog #	4426961
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System Message

Genomic Map