Name: [Hs03872222_g1] [SMC5-AS1]
Creator: Thermo Fisher Scientific
Keywords: [SMC5-AS1] Assay, [SMC5 antisense RNA 1 (head to head)] Assay

Assay Details

Gene Symbol: SMC5-AS1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NR_039990.1		1 - 2	478		83
GenBank mRNA	BC040840.1	-	1 - 2	478		83

Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Transcript Location	Amplicon Length
GenBankmRNA	BI603635.1	-	1 - 2	485		Chr. 9 - 70216314 - 70258874 [-] on Build GRCh38	83

Adjacent Gene Details

	Gene name	Gene Symbol	Alias	Distance	Relative Direction	Location Chromsome
Upstream	MAM domain containing 2	MAMDC2		-30.9kb	Anti-sense	Chr. 9 - 70043519 - 70226972 on NCBI Build GRCh38
Downstream	structural maintenance of chromosomes 5	SMC5	SMC5L1	88.0	Anti-sense	Chr. 9 - 70258962 - 70354873 on NCBI Build GRCh38

More Information

Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC0900010362.hg.1
This assay targets the same location as HTA transcript cluster(s) TC09001199.hg.1

Set Membership:

Amplicon length between 71 and 85

Mammalian Gene Collection

Detect Genomic DNA

Homo sapiens

Probe spans exons

MicroArray Probes:

Affymetrix

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Transcriptome Array 2.0	TC0900010362.hg.1	ENST00000594708.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0900010362.hg.1	ENST00000594708.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0900010362.hg.1	ENST00000594708.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0900010362.hg.1	ENST00000594708.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0900010362.hg.1	ENST00000594708.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0900010362.hg.1	ENST00000594708.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0900010362.hg.1	ENST00000594708.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0900010362.hg.1	ENST00000594708.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0900010362.hg.1	NR_039990.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0900010362.hg.1	NR_039990.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0900010362.hg.1	NR_039990.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0900010362.hg.1	NR_039990.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0900010362.hg.1	NR_039990.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0900010362.hg.1	NR_039990.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0900010362.hg.1	NR_039990.1	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR09015342.hg.1	TC09001199.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	PSR09015342.hg.1	NR_039990.1	Refseq
Affymetrix Human Clariom D Assay	PSR0900170940.hg.1	ENST00000594708.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0900170940.hg.1	NR_039990.1	Refseq
Affymetrix Human Clariom D Assay	PSR0900170940.hg.1	ENST00000594708.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0900170940.hg.1	NR_039990.1	Refseq
Affymetrix Human Clariom D Assay	PSR0900170940.hg.1	TC0900010362.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR0900170942.hg.1	ENST00000594708.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0900170942.hg.1	NR_039990.1	Refseq
Affymetrix Human Clariom D Assay	PSR0900170942.hg.1	ENST00000594708.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0900170942.hg.1	NR_039990.1	Refseq
Affymetrix Human Clariom D Assay	PSR0900170942.hg.1	TC0900010362.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR0900170941.hg.1	ENST00000594708.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0900170941.hg.1	NR_039990.1	Refseq
Affymetrix Human Clariom D Assay	PSR0900170941.hg.1	ENST00000594708.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0900170941.hg.1	NR_039990.1	Refseq
Affymetrix Human Clariom D Assay	PSR0900170941.hg.1	TC0900010362.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	TC0900010362.hg.1	ENST00000594708.1	Ensembl
Affymetrix Human Clariom D Assay	TC0900010362.hg.1	ENST00000594708.1	Ensembl
Affymetrix Human Clariom D Assay	TC0900010362.hg.1	ENST00000594708.1	Ensembl
Affymetrix Human Clariom D Assay	TC0900010362.hg.1	ENST00000594708.1	Ensembl
Affymetrix Human Clariom D Assay	TC0900010362.hg.1	ENST00000594708.1	Ensembl
Affymetrix Human Clariom D Assay	TC0900010362.hg.1	ENST00000594708.1	Ensembl
Affymetrix Human Clariom D Assay	TC0900010362.hg.1	ENST00000594708.1	Ensembl
Affymetrix Human Clariom D Assay	TC0900010362.hg.1	ENST00000594708.1	Ensembl
Affymetrix Human Clariom D Assay	TC0900010362.hg.1	NR_039990.1	Refseq
Affymetrix Human Clariom D Assay	TC0900010362.hg.1	NR_039990.1	Refseq
Affymetrix Human Clariom D Assay	TC0900010362.hg.1	NR_039990.1	Refseq
Affymetrix Human Clariom D Assay	TC0900010362.hg.1	NR_039990.1	Refseq
Affymetrix Human Clariom D Assay	TC0900010362.hg.1	NR_039990.1	Refseq
Affymetrix Human Clariom D Assay	TC0900010362.hg.1	NR_039990.1	Refseq
Affymetrix Human Clariom D Assay	TC0900010362.hg.1	NR_039990.1	Refseq
Affymetrix Human Clariom D Assay	PSR0900170943.hg.1	ENST00000594708.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0900170943.hg.1	NR_039990.1	Refseq
Affymetrix Human Clariom D Assay	PSR0900170943.hg.1	ENST00000594708.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0900170943.hg.1	NR_039990.1	Refseq
Affymetrix Human Clariom D Assay	PSR0900170943.hg.1	TC0900010362.hg.1	Clariom D TC

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