Name: [Hs04232435_m1] [C1QTNF3-AMACR]
Creator: Thermo Fisher Scientific
Keywords: [C1QTNF3-AMACR] Assay, [C1QTNF3-AMACR readthrough (NMD candidate)] Assay

Assay Details

Gene Symbol: C1QTNF3-AMACR
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NR_037951.1		6 - 7	765		86
GenBank mRNA	AB209261.1	-	6 - 7	774		86

Interrogated Sequence		Translated Protein	Exon Boundary	Transcript Location	Amplicon Length
GenBankmRNA	FY213173.1	-	3 - 4	Chr. 5 - 33998689 - 34023938 [+] on Build GRCh38	86
GenBankmRNA	FY212965.1	-	3 - 4	Chr. 5 - 33998690 - 34023936 [+] on Build GRCh38	86
GenBankmRNA	FY211704.1	-	3 - 4	Chr. 5 - 33998689 - 34020732 [+] on Build GRCh38	86
GenBankmRNA	FY212525.1	-	2 - 3	Chr. 5 - 33998690 - 34028793 [+] on Build GRCh38	86
GenBankmRNA	FY211019.1	-	2 - 3	Chr. 5 - 33998689 - 34028797 [+] on Build GRCh38	86
GenBankmRNA	FY212703.1	-	3 - 4	Chr. 5 - 33998689 - 34023945 [+] on Build GRCh38	86
GenBankmRNA	FY211892.1	-	3 - 4	Chr. 5 - 33998689 - 34020739 [+] on Build GRCh38	86

Adjacent Gene Details

	Gene name	Gene Symbol	Alias	Distance	Relative Direction	Location Chromsome
Upstream	C1q and tumor necrosis factor related protein 3	C1QTNF3	C1ATNF3, CORCS, CORS, CORS-26, CORS26, CTRP3		Sense	Chr. 5 - 34017858 - 34043266 on NCBI Build GRCh38
Downstream	integral membrane glycoprotein-like	LOC646652		168.8kb	Anti-sense	Chr. 5 - 34189581 - 34194204 on NCBI Build GRCh38

More Information

Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC0500013296.hg.1

Set Membership:

Amplicon length between 86 and 100

Homo sapiens

Probe spans exons

MicroArray Probes:

Affymetrix

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Transcriptome Array 2.0	TC0500013296.hg.1	ENST00000382079.3	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0500013296.hg.1	ENST00000382079.3	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0500013296.hg.1	ENST00000382079.3	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0500013296.hg.1	ENST00000382079.3	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0500013296.hg.1	ENST00000382079.3	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0500013296.hg.1	ENST00000382079.3	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0500013296.hg.1	ENST00000382079.3	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0500013296.hg.1	ENST00000382079.3	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0500013296.hg.1	ENST00000382079.3	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0500013296.hg.1	ENST00000382079.3	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0500013296.hg.1	ENST00000382079.3	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0500013296.hg.1	NR_037951.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0500013296.hg.1	NR_037951.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0500013296.hg.1	NR_037951.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0500013296.hg.1	NR_037951.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0500013296.hg.1	NR_037951.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0500013296.hg.1	NR_037951.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0500013296.hg.1	NR_037951.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0500013296.hg.1	NR_037951.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0500013296.hg.1	NR_037951.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0500013296.hg.1	NR_037951.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0500013296.hg.1	NR_037951.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0500013296.hg.1	NR_037951.1	Refseq
Affymetrix Human Clariom D Assay	PSR0500195336.hg.1	ENST00000382079.3	Ensembl
Affymetrix Human Clariom D Assay	PSR0500195336.hg.1	NR_037951.1	Refseq
Affymetrix Human Clariom D Assay	PSR0500195336.hg.1	ENST00000382079.3	Ensembl
Affymetrix Human Clariom D Assay	PSR0500195336.hg.1	NR_037951.1	Refseq
Affymetrix Human Clariom D Assay	PSR0500195336.hg.1	TC0500013296.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	TC0500013296.hg.1	ENST00000382079.3	Ensembl
Affymetrix Human Clariom D Assay	TC0500013296.hg.1	ENST00000382079.3	Ensembl
Affymetrix Human Clariom D Assay	TC0500013296.hg.1	ENST00000382079.3	Ensembl
Affymetrix Human Clariom D Assay	TC0500013296.hg.1	ENST00000382079.3	Ensembl
Affymetrix Human Clariom D Assay	TC0500013296.hg.1	ENST00000382079.3	Ensembl
Affymetrix Human Clariom D Assay	TC0500013296.hg.1	ENST00000382079.3	Ensembl
Affymetrix Human Clariom D Assay	TC0500013296.hg.1	ENST00000382079.3	Ensembl
Affymetrix Human Clariom D Assay	TC0500013296.hg.1	ENST00000382079.3	Ensembl
Affymetrix Human Clariom D Assay	TC0500013296.hg.1	ENST00000382079.3	Ensembl
Affymetrix Human Clariom D Assay	TC0500013296.hg.1	ENST00000382079.3	Ensembl
Affymetrix Human Clariom D Assay	TC0500013296.hg.1	ENST00000382079.3	Ensembl
Affymetrix Human Clariom D Assay	TC0500013296.hg.1	NR_037951.1	Refseq
Affymetrix Human Clariom D Assay	TC0500013296.hg.1	NR_037951.1	Refseq
Affymetrix Human Clariom D Assay	TC0500013296.hg.1	NR_037951.1	Refseq
Affymetrix Human Clariom D Assay	TC0500013296.hg.1	NR_037951.1	Refseq
Affymetrix Human Clariom D Assay	TC0500013296.hg.1	NR_037951.1	Refseq
Affymetrix Human Clariom D Assay	TC0500013296.hg.1	NR_037951.1	Refseq
Affymetrix Human Clariom D Assay	TC0500013296.hg.1	NR_037951.1	Refseq
Affymetrix Human Clariom D Assay	TC0500013296.hg.1	NR_037951.1	Refseq
Affymetrix Human Clariom D Assay	TC0500013296.hg.1	NR_037951.1	Refseq
Affymetrix Human Clariom D Assay	TC0500013296.hg.1	NR_037951.1	Refseq
Affymetrix Human Clariom D Assay	TC0500013296.hg.1	NR_037951.1	Refseq
Affymetrix Human Clariom D Assay	TC0500013296.hg.1	NR_037951.1	Refseq

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Genomic Map