Assay Details

Gene Symbol: MIR653
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NR_030388.1		1	42		83

Adjacent Gene Details

	Gene name	Gene Symbol	Alias	Distance	Relative Direction	Location Chromsome
Upstream	VPS50, EARP/GARPII complex subunit	VPS50	CCDC132, VPS54L	-121.6kb	Anti-sense	Chr. 7 - 93232340 - 93361123 on NCBI Build GRCh38
Downstream	microRNA 489	MIR489	MIRN489, hsa-mir-489, mir-489	1.1kb	Sense	Chr. 7 - 93483936 - 93484019 on NCBI Build GRCh38

More Information

Updated Mapping Information

This assay is designed to target a precursor miRNA (pre-miRNA) target. It may not discriminate between the primary transcript (pri-miRNA) and the pre-miRNA for this miRNA. If you are looking for an assay to detect the mature miRNA, please search the MicroRNA collection of assays.
This assay targets the same location as Clariom D transcript cluster(s) TC0700011804.hg.1
This assay targets the same location as HTA transcript cluster(s) TC07001609.hg.1

Set Membership:

Amplicon length between 71 and 85

3' Most

Detect Genomic DNA

Homo sapiens

Both primers and probe map within a single exon

MicroArray Probes:

Agilent Affymetrix Illumina

Array Name	Probe IDs	Targets	Target Type
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P25869316	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P05618262	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P25869319	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P25869318	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P25869320	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P25869320	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P25869318	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P25869316	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P25869319	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P05618262	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Transcriptome Array 2.0	TC0700011804.hg.1	ENST00000385279.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0700011804.hg.1	NR_030388.1	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR07024426.hg.1	TC07001609.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	PSR07024426.hg.1	ENST00000385279.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR07024426.hg.1	NR_030388.1	Refseq
Affymetrix Human Clariom D Assay	TC0700011804.hg.1	ENST00000385279.1	Ensembl
Affymetrix Human Clariom D Assay	TC0700011804.hg.1	NR_030388.1	Refseq
Affymetrix Human Clariom D Assay	PSR0700184353.hg.1	ENST00000385279.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0700184353.hg.1	NR_030388.1	Refseq
Affymetrix Human Clariom D Assay	PSR0700184353.hg.1	ENST00000385279.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0700184353.hg.1	NR_030388.1	Refseq
Affymetrix Human Clariom D Assay	PSR0700184353.hg.1	TC0700011804.hg.1	Clariom D TC

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Catalog #	4426961
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Array Name	Probe IDs	Targets	Target Type
HumanHT-12 v4 Expression BeadChip	ILMN_3309784	NR_030388.1	human_transcriptome
HumanHT-12 V4.0 expression beadchip	ILMN_3309784	NR_030388.1	human_transcriptome
Illumina HumanHT-12 WG-DASL V4.0 expression beadchip	ILMN_3309784	NR_030388.1	human_transcriptome
Illumina HumanHT-12 WG-DASL V4.0 R2 expression beadchip	ILMN_3309784	NR_030388.1	human_transcriptome

System Message

Genomic Map