Assay Details

Gene Symbol: MIR378D2
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NR_039602.1		1	51		86

Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	Transcript Location	Amplicon Length
GenBankmRNA	AI079672.1	-	1		Chr. 8 - 93915734 - 93916144 [+] on Build GRCh38	86
GenBankmRNA	AA845599.1	-	1		Chr. 8 - 93915734 - 93916276 [+] on Build GRCh38	86
GenBankmRNA	BE880031.1	-	1	596	Chr. 8 - 93915981 - 93916622 [-] on Build GRCh38	87

Adjacent Gene Details

	Gene name	Gene Symbol	Alias	Distance	Relative Direction	Location Chromsome
Upstream	transmembrane protein 67	TMEM67	JBTS6, MECKELIN, MKS3, NPHP11, TNEM67	-83.4kb	Anti-sense	Chr. 8 - 93754844 - 93832653 on NCBI Build GRCh38
Downstream	pyruvate dehyrogenase phosphatase catalytic subunit 1	PDP1	PDH, PDP, PDPC, PPM2A, PPM2C	736.0	Anti-sense	Chr. 8 - 93916855 - 93926068 on NCBI Build GRCh38

More Information

Updated Mapping Information

This assay is designed to target a precursor miRNA (pre-miRNA) target. It may not discriminate between the primary transcript (pri-miRNA) and the pre-miRNA for this miRNA. If you are looking for an assay to detect the mature miRNA, please search the MicroRNA collection of assays.
This assay targets the same location as Clariom D transcript cluster(s) TC0800011122.hg.1
This assay targets the same location as HTA transcript cluster(s) TC08001429.hg.1

Set Membership:

Amplicon length between 86 and 100

3' Most

Detect Genomic DNA

Homo sapiens

Both primers and probe map within a single exon

MicroArray Probes:

Affymetrix

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Transcriptome Array 2.0	TC0800011122.hg.1	ENST00000580636.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0800011122.hg.1	ENST00000607097.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0800011122.hg.1	ENST00000607097.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0800011122.hg.1	ENST00000607097.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0800011122.hg.1	NR_039602.1	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR08018538.hg.1	TC08001429.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	PSR08018538.hg.1	NR_039602.1	Refseq
Affymetrix Human Clariom D Assay	PSR0800175737.hg.1	ENST00000580636.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0800175737.hg.1	ENST00000607097.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0800175737.hg.1	NR_039602.1	Refseq
Affymetrix Human Clariom D Assay	PSR0800175737.hg.1	ENST00000580636.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0800175737.hg.1	ENST00000607097.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0800175737.hg.1	NR_039602.1	Refseq
Affymetrix Human Clariom D Assay	PSR0800175737.hg.1	TC0800011122.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	TC0800011122.hg.1	ENST00000580636.1	Ensembl
Affymetrix Human Clariom D Assay	TC0800011122.hg.1	ENST00000607097.1	Ensembl
Affymetrix Human Clariom D Assay	TC0800011122.hg.1	ENST00000607097.1	Ensembl
Affymetrix Human Clariom D Assay	TC0800011122.hg.1	ENST00000607097.1	Ensembl
Affymetrix Human Clariom D Assay	TC0800011122.hg.1	NR_039602.1	Refseq

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System Message

Genomic Map