Hs00017159_cn

• Gene Symbol: AGPAT2
• Assay Reference Genome Location: Chr.9:136673821 on build GRCh38
• Cytoband: 9q34.3

Target Gene Details

• Entrez Gene ID: 10555
• Gene Name: 1-acylglycerol-3-phosphate O-acyltransferase 2
• Gene Aliases: 1-AGPAT2, BSCL, BSCL1, LPAAB, LPAAT-beta
• Location: Chr.9:136673143-136687459 on Build GRCh38
• Assay Gene Location: Within Exon 6

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
AGPAT2	NM_001012727.1	5	774	NP_001012745.1
	NM_006412.3	6	870	NP_006403.2
	AF000237.1	6	834	AAC51649.1
	AF011374.1	6	828	AAB64299.1
	BC000026.2	6	813	AAH00026.1
	BC004529.2	5	708	AAH04529.1
	BC007269.1	4	445	AAH07269.1
	BC019292.1	6	822	AAH19292.1
	U56418.2	6	807	AAB58776.2

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv13005n54	Chr.9:136605258 - 136696482 on Build GRCh38	Loss	MIR126 LINC01451 AGPAT2 EGFL7 HSPC324
esv32979	Chr.9:136666564 - 136674090 on Build GRCh38	Gain	MIR126 AGPAT2 EGFL7
nsv509334	Chr.9:136514168 - 136724663 on Build GRCh38	Insertion	MIR126 MIR4673 LINC01451 NOTCH1 AGPAT2 EGFL7 SNHG7 FAM69B MIR4674 NALT1 HSPC324
nsv951203	Chr.9:136562849 - 136770848 on Build GRCh38	Deletion	SNORA17A MIR6722 MIR126 LINC01451 SNORA17B AGPAT2 LCN6 SNHG7 FAM69B LCN15 LOC100128593 LCN8 EGFL7 LCN10 HSPC324
esv2759720	Chr.9:136356377 - 136932033 on Build GRCh38	Loss	MIR6722 SDCCAG3 SNAPC4 MIR126 LINC01451 SNORA17B DNLZ C9orf163 LCN6 PMPCA FAM69B LOC100128593 PHPT1 CARD9 MAMDC4 INPP5E EDF1 SNORA17A TRAF2 AGPAT2 CCDC183-AS1 SNHG7 MIR4292 MIR4674 LCN15 NALT1 RABL6 GPSM1 C9orf172 TMEM141 MIR4479 MIR4673 LCN8 NOTCH1 SEC16A EGFL7 LCN10 CCDC183 HSPC324
nsv469918	Chr.9:136359865 - 137173890 on Build GRCh38	Loss	LCNL1 SNAPC4 PMPCA MAN1B1-AS1 LOC100128593 PHPT1 ABCA2 EDF1 MAN1B1 SNORA17A MIR3621 C9orf142 TMEM210 GRIN1 CLIC3 LRRC26 TRAF2 AGPAT2 SNHG7 MIR4292 LOC101930307 MIR4674 LCN15 NALT1 LCN8 PRR31 NOTCH1 SEC16A CCDC183 HSPC324 MIR6722 NPDC1 SDCCAG3 MIR126 FBXW5 LINC01451 SNORA17B DNLZ C9orf163 C8G LCN6 FAM69B DPP7 CARD9 MAMDC4 ENTPD2 INPP5E CCDC183-AS1 C9orf139 LCN12 SAPCD2 FUT7 RABL6 PTGDS C9orf172 TMEM141 MIR4479 MIR4673 EGFL7 LCN10 UAP1L1
nsv8579	Chr.9:136505432 - 136760256 on Build GRCh38	Gain	SNORA17A MIR6722 MIR126 LINC01451 SNORA17B AGPAT2 LCN6 SNHG7 FAM69B MIR4674 LCN15 NALT1 LOC100128593 MIR4673 LCN8 NOTCH1 EGFL7 LCN10 HSPC324
dgv955n27	Chr.9:136583078 - 136676165 on Build GRCh38	Loss	MIR126 LINC01451 AGPAT2 EGFL7 HSPC324
nsv1053781	Chr.9:136590694 - 136722927 on Build GRCh38	Gain	MIR126 LINC01451 AGPAT2 EGFL7 FAM69B HSPC324
dgv13006n54	Chr.9:136619086 - 136725859 on Build GRCh38	Loss	MIR126 AGPAT2 EGFL7 SNHG7 FAM69B HSPC324
esv2422220	Chr.9:136584135 - 137350098 on Build GRCh38	Deletion	LCNL1 MAN1B1-AS1 LOC100128593 TMEM203 PHPT1 ABCA2 STPG3 EDF1 MAN1B1 NRARP SNORA17A MIR3621 C9orf142 TMEM210 GRIN1 CLIC3 LRRC26 SLC34A3 TRAF2 FAM166A AGPAT2 SNHG7 MIR4292 LOC101930307 LCN15 LCN8 PRR31 CYSRT1 CCDC183 HSPC324 SSNA1 ANAPC2 MIR6722 NPDC1 MIR126 FBXW5 RNF224 LINC01451 SNORA17B C9orf173-AS1 C8G LCN6 TOR4A EXD3 FAM69B RNF208 NELFB DPP7 MAMDC4 ENTPD2 NDOR1 CCDC183-AS1 C9orf139 LCN12 SAPCD2 FUT7 RABL6 TPRN PTGDS C9orf172 TMEM141 MIR4479 EGFL7 LCN10 TUBB4B UAP1L1

More Information

• Set Membership: Intragenic, Exonic, DGV Variation

Panther Classification:

Molecular Function -

acyltransferase

Gene Ontology Categories:

Process(es)

positive regulation of cytokine production
positive regulation of cytokine-mediated signaling pathway
phospholipid metabolic process
phosphatidic acid biosynthetic process
epidermis development
CDP-diacylglycerol biosynthetic process
triglyceride biosynthetic process
response to antidepressant

Function(s)

1-acylglycerol-3-phosphate O-acyltransferase activity