Hs00017159_cn

• Gene Symbol: AGPAT2
• Assay Reference Genome Location: Chr.9:136673821 on build GRCh38
• Cytoband: 9q34.3

Target Gene Details

• Entrez Gene ID: 10555
• Gene Name: 1-acylglycerol-3-phosphate O-acyltransferase 2
• Gene Aliases: 1-AGPAT2, BSCL, BSCL1, LPAAB, LPAAT-beta
• Location: Chr.9:136673143-136687459 on Build GRCh38
• Assay Gene Location: Within Exon 6

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
AGPAT2	NM_001012727.1	5	774	NP_001012745.1
	NM_006412.3	6	870	NP_006403.2
	AF000237.1	6	834	AAC51649.1
	AF011374.1	6	828	AAB64299.1
	BC000026.2	6	813	AAH00026.1
	BC004529.2	5	708	AAH04529.1
	BC007269.1	4	445	AAH07269.1
	BC019292.1	6	822	AAH19292.1
	U56418.2	6	807	AAB58776.2

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
esv32979	Chr.9:136666564 - 136674090 on Build GRCh38	Gain	MIR126 AGPAT2 EGFL7
dgv13005n54	Chr.9:136605258 - 136696482 on Build GRCh38	Loss	MIR126 AGPAT2 LINC01451 EGFL7 HSPC324
nsv509334	Chr.9:136514168 - 136724663 on Build GRCh38	Insertion	NALT1 MIR126 NOTCH1 MIR4674 MIR4673 SNHG7 AGPAT2 LINC01451 FAM69B EGFL7 HSPC324
nsv951203	Chr.9:136562849 - 136770848 on Build GRCh38	Deletion	MIR126 LCN8 EGFL7 LCN10 LCN6 SNORA17A SNHG7 LOC100128593 LCN15 AGPAT2 MIR6722 SNORA17B LINC01451 FAM69B HSPC324
nsv469918	Chr.9:136359865 - 137173890 on Build GRCh38	Loss	MIR126 SDCCAG3 NPDC1 MAN1B1-AS1 C8G EGFL7 MIR4292 TMEM141 CCDC183 SNHG7 MIR6722 SNORA17B C9orf163 FAM69B MAN1B1 ENTPD2 PRR31 C9orf139 LCN8 INPP5E PTGDS LOC100128593 LCN15 AGPAT2 C9orf172 ABCA2 HSPC324 MIR4674 UAP1L1 CARD9 LCN10 PHPT1 LCN6 DPP7 NOTCH1 SNAPC4 CCDC183-AS1 LRRC26 EDF1 RABL6 DNLZ GRIN1 LINC01451 MIR3621 LCNL1 MAMDC4 TRAF2 LOC101930307 LCN12 FBXW5 NALT1 SAPCD2 TMEM210 MIR4673 SNORA17A PMPCA C9orf142 MIR4479 CLIC3 SEC16A FUT7
esv2759720	Chr.9:136356377 - 136932033 on Build GRCh38	Loss	MIR126 MIR4674 SDCCAG3 CARD9 EGFL7 LCN10 MIR4292 PHPT1 LCN6 NOTCH1 TMEM141 CCDC183 SNHG7 SNAPC4 CCDC183-AS1 GPSM1 EDF1 MIR6722 RABL6 DNLZ SNORA17B C9orf163 LINC01451 FAM69B MAMDC4 TRAF2 LCN8 NALT1 INPP5E MIR4673 SNORA17A PMPCA LOC100128593 LCN15 AGPAT2 MIR4479 C9orf172 HSPC324 SEC16A
nsv8579	Chr.9:136505432 - 136760256 on Build GRCh38	Gain	MIR126 MIR4674 LCN8 EGFL7 LCN10 NALT1 LCN6 NOTCH1 MIR4673 SNORA17A SNHG7 LOC100128593 LCN15 AGPAT2 MIR6722 SNORA17B LINC01451 FAM69B HSPC324
dgv955n27	Chr.9:136583078 - 136676165 on Build GRCh38	Loss	MIR126 AGPAT2 LINC01451 EGFL7 HSPC324
nsv1053781	Chr.9:136590694 - 136722927 on Build GRCh38	Gain	MIR126 AGPAT2 LINC01451 FAM69B EGFL7 HSPC324
dgv957n27	Chr.9:136619086 - 136725859 on Build GRCh38	Loss	MIR126 SNHG7 AGPAT2 FAM69B EGFL7 HSPC324
esv2422220	Chr.9:136584135 - 137350098 on Build GRCh38	Deletion	MIR126 CYSRT1 NPDC1 ANAPC2 MAN1B1-AS1 EXD3 C8G EGFL7 MIR4292 TMEM141 CCDC183 SSNA1 SNHG7 NDOR1 MIR6722 SNORA17B FAM69B NRARP MAN1B1 ENTPD2 PRR31 C9orf173-AS1 C9orf139 LCN8 STPG3 TOR4A PTGDS LOC100128593 LCN15 AGPAT2 C9orf172 ABCA2 HSPC324 UAP1L1 NELFB FAM166A TUBB4B LCN10 PHPT1 LCN6 DPP7 TMEM203 TPRN CCDC183-AS1 RNF224 LRRC26 EDF1 RABL6 GRIN1 LINC01451 MIR3621 RNF208 LCNL1 MAMDC4 TRAF2 LOC101930307 LCN12 FBXW5 SAPCD2 TMEM210 SNORA17A C9orf142 SLC34A3 MIR4479 CLIC3 FUT7

More Information

• Set Membership: Intragenic, Exonic, DGV Variation

Panther Classification:

Molecular Function -

acyltransferase

Gene Ontology Categories:

Process(es)

positive regulation of cytokine production
positive regulation of cytokine-mediated signaling pathway
phospholipid metabolic process
phosphatidic acid biosynthetic process
epidermis development
CDP-diacylglycerol biosynthetic process
triglyceride biosynthetic process
response to antidepressant

Function(s)

1-acylglycerol-3-phosphate O-acyltransferase activity