Hs00068537_cn

• Gene Symbol: AGPAT2
• Assay Reference Genome Location: Chr.9:136673478 on build GRCh38
• Cytoband: 9q34.3

Target Gene Details

• Entrez Gene ID: 10555
• Gene Name: 1-acylglycerol-3-phosphate O-acyltransferase 2
• Gene Aliases: 1-AGPAT2, BSCL, BSCL1, LPAAB, LPAAT-beta
• Location: Chr.9:136673143-136687459 on Build GRCh38
• Assay Gene Location: Within Exon 6

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
AGPAT2	NM_001012727.1	5	1117	NP_001012745.1
	NM_006412.3	6	1213	NP_006403.2
	AF000237.1	6	1177	AAC51649.1
	AF011374.1	6	1171	AAB64299.1
	BC000026.2	6	1156	AAH00026.1
	BC004529.2	5	1051	AAH04529.1
	BC007269.1	4	788	AAH07269.1
	BC019292.1	6	1165	AAH19292.1
	U56418.2	6	1150	AAB58776.2

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
esv32979	Chr.9:136666564 - 136674090 on Build GRCh38	Gain	MIR126 EGFL7 AGPAT2
dgv13005n54	Chr.9:136605258 - 136696482 on Build GRCh38	Loss	MIR126 HSPC324 LINC01451 EGFL7 AGPAT2
nsv509334	Chr.9:136514168 - 136724663 on Build GRCh38	Insertion	NALT1 MIR4674 MIR126 HSPC324 MIR4673 SNHG7 LINC01451 EGFL7 NOTCH1 FAM69B AGPAT2
nsv951203	Chr.9:136562849 - 136770848 on Build GRCh38	Deletion	LCN8 SNORA17A LCN6 MIR126 HSPC324 LCN10 SNORA17B FAM69B AGPAT2 LCN15 SNHG7 LINC01451 EGFL7 LOC100128593 MIR6722
nsv469918	Chr.9:136359865 - 137173890 on Build GRCh38	Loss	NALT1 SNORA17A MIR4673 SNORA17B C8G TMEM141 PTGDS ENTPD2 C9orf163 FBXW5 GRIN1 SNHG7 MIR6722 TRAF2 CCDC183 DNLZ LCN8 FUT7 PHPT1 MIR4674 ABCA2 SAPCD2 RABL6 LINC01451 UAP1L1 C9orf139 LCN12 DPP7 MIR4479 CARD9 LCN6 C9orf142 FAM69B LCN15 C9orf172 LCNL1 LOC100128593 NPDC1 CLIC3 SDCCAG3 LRRC26 PMPCA MIR4292 MAMDC4 MAN1B1 MIR126 HSPC324 LCN10 PRR31 MIR3621 LOC101930307 SNAPC4 TMEM210 EDF1 AGPAT2 SEC16A CCDC183-AS1 MAN1B1-AS1 EGFL7 NOTCH1 INPP5E
esv2759720	Chr.9:136356377 - 136932033 on Build GRCh38	Loss	NALT1 MIR4479 SNORA17A CARD9 LCN6 MIR4673 SNORA17B FAM69B LCN15 TMEM141 C9orf163 C9orf172 SNHG7 LOC100128593 GPSM1 MIR6722 TRAF2 CCDC183 SDCCAG3 DNLZ PMPCA LCN8 MIR4292 MAMDC4 MIR126 HSPC324 LCN10 SNAPC4 PHPT1 EDF1 AGPAT2 MIR4674 SEC16A RABL6 CCDC183-AS1 LINC01451 EGFL7 NOTCH1 INPP5E
nsv8579	Chr.9:136505432 - 136760256 on Build GRCh38	Gain	NALT1 LCN8 SNORA17A LCN6 MIR126 HSPC324 MIR4673 LCN10 SNORA17B FAM69B AGPAT2 LCN15 MIR4674 SNHG7 LINC01451 EGFL7 NOTCH1 LOC100128593 MIR6722
dgv955n27	Chr.9:136583078 - 136676165 on Build GRCh38	Loss	MIR126 HSPC324 LINC01451 EGFL7 AGPAT2
nsv1053781	Chr.9:136590694 - 136722927 on Build GRCh38	Gain	MIR126 HSPC324 LINC01451 EGFL7 FAM69B AGPAT2
dgv957n27	Chr.9:136619086 - 136725859 on Build GRCh38	Loss	MIR126 HSPC324 SNHG7 EGFL7 FAM69B AGPAT2
esv2422220	Chr.9:136584135 - 137350098 on Build GRCh38	Deletion	SNORA17A NDOR1 SNORA17B C8G TMEM141 TUBB4B PTGDS TPRN ENTPD2 FBXW5 GRIN1 SNHG7 MIR6722 RNF224 TRAF2 CCDC183 LCN8 NELFB CYSRT1 FUT7 RNF208 EXD3 PHPT1 ABCA2 SAPCD2 RABL6 LINC01451 UAP1L1 C9orf139 LCN12 NRARP DPP7 C9orf173-AS1 MIR4479 LCN6 ANAPC2 C9orf142 TMEM203 FAM69B LCN15 SSNA1 STPG3 C9orf172 LCNL1 LOC100128593 NPDC1 CLIC3 TOR4A LRRC26 MIR4292 MAMDC4 MAN1B1 MIR126 HSPC324 LCN10 PRR31 MIR3621 LOC101930307 SLC34A3 TMEM210 EDF1 AGPAT2 CCDC183-AS1 MAN1B1-AS1 EGFL7 FAM166A

More Information

• Set Membership: Intragenic, Exonic, DGV Variation

Panther Classification:

Molecular Function -

acyltransferase

Gene Ontology Categories:

Process(es)

positive regulation of cytokine production
positive regulation of cytokine-mediated signaling pathway
phospholipid metabolic process
phosphatidic acid biosynthetic process
epidermis development
CDP-diacylglycerol biosynthetic process
triglyceride biosynthetic process
response to antidepressant

Function(s)

1-acylglycerol-3-phosphate O-acyltransferase activity