Hs00068537_cn

• Gene Symbol: AGPAT2
• Assay Reference Genome Location: Chr.9:136673478 on build GRCh38
• Cytoband: 9q34.3

Target Gene Details

• Entrez Gene ID: 10555
• Gene Name: 1-acylglycerol-3-phosphate O-acyltransferase 2
• Gene Aliases: 1-AGPAT2, BSCL, BSCL1, LPAAB, LPAAT-beta
• Location: Chr.9:136673143-136687459 on Build GRCh38
• Assay Gene Location: Within Exon 6

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
AGPAT2	NM_001012727.1	5	1117	NP_001012745.1
	NM_006412.3	6	1213	NP_006403.2
	AF000237.1	6	1177	AAC51649.1
	AF011374.1	6	1171	AAB64299.1
	BC000026.2	6	1156	AAH00026.1
	BC004529.2	5	1051	AAH04529.1
	BC007269.1	4	788	AAH07269.1
	BC019292.1	6	1165	AAH19292.1
	U56418.2	6	1150	AAB58776.2

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv13005n54	Chr.9:136605258 - 136696482 on Build GRCh38	Loss	LINC01451 HSPC324 EGFL7 MIR126 AGPAT2
esv32979	Chr.9:136666564 - 136674090 on Build GRCh38	Gain	EGFL7 MIR126 AGPAT2
nsv509334	Chr.9:136514168 - 136724663 on Build GRCh38	Insertion	LINC01451 NALT1 MIR4673 HSPC324 EGFL7 SNHG7 FAM69B NOTCH1 MIR126 AGPAT2 MIR4674
nsv951203	Chr.9:136562849 - 136770848 on Build GRCh38	Deletion	SNORA17A LCN15 MIR6722 MIR126 LCN8 LINC01451 LCN6 HSPC324 EGFL7 SNHG7 FAM69B SNORA17B LCN10 LOC100128593 AGPAT2
esv2759720	Chr.9:136356377 - 136932033 on Build GRCh38	Loss	SNAPC4 NALT1 LCN15 MAMDC4 MIR4673 MIR4479 MIR6722 MIR4292 C9orf172 MIR126 CCDC183-AS1 EDF1 PMPCA INPP5E HSPC324 EGFL7 NOTCH1 CARD9 TMEM141 SNORA17A CCDC183 LCN8 DNLZ PHPT1 MIR4674 LINC01451 RABL6 LCN6 C9orf163 SNHG7 FAM69B SNORA17B LCN10 SEC16A SDCCAG3 GPSM1 LOC100128593 AGPAT2 TRAF2
nsv469918	Chr.9:136359865 - 137173890 on Build GRCh38	Loss	LCN12 MAN1B1 NALT1 MIR4673 MIR4479 C9orf172 LOC101930307 CCDC183-AS1 INPP5E CLIC3 ABCA2 FBXW5 C8G SNORA17A CCDC183 LCNL1 LCN8 DNLZ NPDC1 TMEM210 LINC01451 RABL6 PRR31 DPP7 LCN6 SAPCD2 UAP1L1 SNHG7 FAM69B C9orf139 LCN10 MAN1B1-AS1 SEC16A SDCCAG3 LOC100128593 AGPAT2 ENTPD2 TRAF2 SNAPC4 LCN15 MAMDC4 MIR6722 MIR4292 C9orf142 MIR126 EDF1 PMPCA HSPC324 EGFL7 NOTCH1 PTGDS CARD9 TMEM141 FUT7 PHPT1 MIR4674 LRRC26 C9orf163 GRIN1 SNORA17B MIR3621
nsv8579	Chr.9:136505432 - 136760256 on Build GRCh38	Gain	SNORA17A NALT1 LCN15 MIR4673 MIR6722 MIR126 LCN8 MIR4674 LINC01451 LCN6 HSPC324 EGFL7 SNHG7 FAM69B SNORA17B NOTCH1 LCN10 LOC100128593 AGPAT2
dgv955n27	Chr.9:136583078 - 136676165 on Build GRCh38	Loss	LINC01451 HSPC324 EGFL7 MIR126 AGPAT2
nsv1053781	Chr.9:136590694 - 136722927 on Build GRCh38	Gain	LINC01451 HSPC324 EGFL7 FAM69B MIR126 AGPAT2
dgv13006n54	Chr.9:136619086 - 136725859 on Build GRCh38	Loss	HSPC324 EGFL7 SNHG7 FAM69B MIR126 AGPAT2
esv2422220	Chr.9:136584135 - 137350098 on Build GRCh38	Deletion	LCN12 MAN1B1 MIR4479 NRARP TPRN C9orf172 LOC101930307 C9orf173-AS1 CCDC183-AS1 RNF208 CLIC3 ABCA2 SLC34A3 FBXW5 C8G CYSRT1 SNORA17A STPG3 CCDC183 LCNL1 LCN8 NPDC1 TMEM210 LINC01451 RABL6 PRR31 DPP7 LCN6 SAPCD2 UAP1L1 ANAPC2 SNHG7 FAM69B NDOR1 C9orf139 LCN10 MAN1B1-AS1 LOC100128593 AGPAT2 ENTPD2 TRAF2 TMEM203 LCN15 MAMDC4 MIR6722 MIR4292 C9orf142 MIR126 EXD3 RNF224 EDF1 NELFB HSPC324 EGFL7 TOR4A PTGDS TMEM141 FUT7 PHPT1 LRRC26 GRIN1 SNORA17B TUBB4B SSNA1 MIR3621 FAM166A

More Information

• Set Membership: Intragenic, Exonic, DGV Variation

Panther Classification:

Molecular Function -

acyltransferase

Gene Ontology Categories:

Process(es)

positive regulation of cytokine production
positive regulation of cytokine-mediated signaling pathway
phospholipid metabolic process
phosphatidic acid biosynthetic process
epidermis development
CDP-diacylglycerol biosynthetic process
triglyceride biosynthetic process
response to antidepressant

Function(s)

1-acylglycerol-3-phosphate O-acyltransferase activity