Hs00085627_cn

• Gene Symbol: AGPAT2
• Assay Reference Genome Location: Chr.9:136676976 on build GRCh38
• Cytoband: 9q34.3

Target Gene Details

• Entrez Gene ID: 10555
• Gene Name: 1-acylglycerol-3-phosphate O-acyltransferase 2
• Gene Aliases: 1-AGPAT2, BSCL, BSCL1, LPAAB, LPAAT-beta
• Location: Chr.9:136673143-136687459 on Build GRCh38
• Assay Gene Location: Overlaps Intron 3 - Exon 3

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
AGPAT2	NM_001012727.1			NP_001012745.1
	NM_006412.3			NP_006403.2
	AF000237.1			AAC51649.1
	AF011374.1			AAB64299.1
	BC000026.2			AAH00026.1
	BC004529.2			AAH04529.1
	BC007269.1			AAH07269.1
	BC019292.1			AAH19292.1
	BF347518.1
	CN407343.1
	U56418.2			AAB58776.2

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv13005n54	Chr.9:136605258 - 136696482 on Build GRCh38	Loss	AGPAT2 MIR126 HSPC324 EGFL7 LINC01451
nsv509334	Chr.9:136514168 - 136724663 on Build GRCh38	Insertion	NALT1 AGPAT2 MIR4673 NOTCH1 MIR126 HSPC324 FAM69B EGFL7 MIR4674 LINC01451 SNHG7
nsv951203	Chr.9:136562849 - 136770848 on Build GRCh38	Deletion	MIR6722 LCN8 LCN6 AGPAT2 MIR126 EGFL7 SNORA17B LCN10 LOC100128593 LCN15 SNORA17A HSPC324 FAM69B LINC01451 SNHG7
nsv469918	Chr.9:136359865 - 137173890 on Build GRCh38	Loss	MIR6722 DPP7 EDF1 MIR126 SAPCD2 TRAF2 NPDC1 C9orf142 SNAPC4 LINC01451 MIR4292 INPP5E MAN1B1-AS1 C9orf139 LCN6 NOTCH1 TMEM210 LCN12 GRIN1 LCN10 FUT7 MIR4673 LRRC26 DNLZ UAP1L1 LCN15 MIR3621 ENTPD2 FBXW5 AGPAT2 RABL6 LOC101930307 LCNL1 MAMDC4 MAN1B1 PTGDS SNORA17B LOC100128593 CARD9 FAM69B MIR4479 C9orf172 PHPT1 TMEM141 SDCCAG3 NALT1 LCN8 SEC16A PMPCA EGFL7 CLIC3 MIR4674 PRR31 CCDC183 C8G SNORA17A CCDC183-AS1 HSPC324 ABCA2 C9orf163 SNHG7
esv2759720	Chr.9:136356377 - 136932033 on Build GRCh38	Loss	MIR6722 AGPAT2 EDF1 MIR126 RABL6 MAMDC4 SNORA17B TRAF2 LOC100128593 SNAPC4 CARD9 FAM69B LINC01451 MIR4479 MIR4292 C9orf172 INPP5E PHPT1 TMEM141 SDCCAG3 NALT1 LCN8 LCN6 NOTCH1 SEC16A PMPCA GPSM1 EGFL7 MIR4674 CCDC183 LCN10 MIR4673 DNLZ LCN15 SNORA17A CCDC183-AS1 HSPC324 C9orf163 SNHG7
nsv8579	Chr.9:136505432 - 136760256 on Build GRCh38	Gain	MIR6722 NALT1 LCN8 LCN6 AGPAT2 NOTCH1 MIR126 EGFL7 MIR4674 SNORA17B LCN10 MIR4673 LOC100128593 LCN15 SNORA17A HSPC324 FAM69B LINC01451 SNHG7
nsv1053781	Chr.9:136590694 - 136722927 on Build GRCh38	Gain	AGPAT2 MIR126 HSPC324 FAM69B EGFL7 LINC01451
dgv957n27	Chr.9:136619086 - 136725859 on Build GRCh38	Loss	AGPAT2 MIR126 HSPC324 FAM69B EGFL7 SNHG7
esv2422220	Chr.9:136584135 - 137350098 on Build GRCh38	Deletion	MIR6722 DPP7 EDF1 MIR126 STPG3 RNF208 SAPCD2 TRAF2 ANAPC2 NPDC1 NRARP C9orf142 LINC01451 MIR4292 MAN1B1-AS1 C9orf139 TOR4A LCN6 TMEM210 TMEM203 NDOR1 LCN12 NELFB GRIN1 LCN10 FUT7 LRRC26 UAP1L1 LCN15 RNF224 CYSRT1 TPRN MIR3621 ENTPD2 FBXW5 FAM166A AGPAT2 RABL6 LOC101930307 LCNL1 MAMDC4 MAN1B1 EXD3 PTGDS SNORA17B LOC100128593 FAM69B TUBB4B MIR4479 C9orf172 PHPT1 TMEM141 LCN8 EGFL7 CLIC3 PRR31 CCDC183 C8G SLC34A3 C9orf173-AS1 SNORA17A SSNA1 CCDC183-AS1 HSPC324 ABCA2 SNHG7

More Information

• Set Membership: Intragenic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

acyltransferase

Gene Ontology Categories:

Process(es)

positive regulation of cytokine production
positive regulation of cytokine-mediated signaling pathway
phospholipid metabolic process
phosphatidic acid biosynthetic process
epidermis development
CDP-diacylglycerol biosynthetic process
triglyceride biosynthetic process
response to antidepressant

Function(s)

1-acylglycerol-3-phosphate O-acyltransferase activity