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See other FANCA CNV Assays ›
Gene Symbol
FANCA
Assay Reference Genome
Location

Chr.16:89737809 on build GRCh38
Cytoband
16q24.3
Assay ID Hs00129070_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 2175

Gene Name:

 Fanconi anemia complementation group A

Gene Aliases:

 FA, FA-H, FA1, FAA, FACA, FAH, FANCH

Location:

 Chr.16:89737551-89816658 on Build GRCh38

Assay Gene Location:

 Within Exon 44
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
FANCA NM_000135.2 43 5202 NP_000126.2
NM_001286167.1 43 5206 NP_001273096.1
DQ574346.1
X99226.1 43 5191 CAA67610.1

Target Gene Details

Entrez Gene ID:

 92822

Gene Name:

 zinc finger protein 276

Gene Aliases:

 CENP-Z, CENPZ, ZADT, ZFP276, ZNF477

Location:

 Chr.16:89720368-89740925 on Build GRCh38

Assay Gene Location:

 Within Exon 13
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
ZNF276 NM_001113525.1 NP_001106997.1
NM_152287.3 NP_689500.2
NR_110122.1 10 1650
NR_110126.1
NR_110128.1
NR_110129.1
XM_005256324.3 XP_005256381.1
XM_005256328.3 XP_005256385.1
XM_017023890.1 XP_016879379.1
AK026482.1
AK056405.1 10 1601
AK096762.1
AK289801.1
AK295770.1
AK315793.1
BC032781.1 AAH32781.2
BC107603.1 AAI07604.1
BC110348.1 AAI10349.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv952079 Chr.16:89685593 - 89749492 on Build GRCh38 Deletion VPS9D1 VPS9D1-AS1 ZNF276 CDK10 SPATA2L FANCA
dgv872e212 Chr.16:89731232 - 89738373 on Build GRCh38 Loss ZNF276 FANCA
nsv573743 Chr.16:89664419 - 89853617 on Build GRCh38 Gain LOC105371419 SPATA33 VPS9D1 VPS9D1-AS1 LOC107984817 ZNF276 CDK10 SPIRE2 SPATA2L FANCA
nsv833330 Chr.16:89678466 - 89741783 on Build GRCh38 Loss VPS9D1 VPS9D1-AS1 ZNF276 CDK10 SPATA2L FANCA
nsv482951 Chr.16:88633593 - 90228345 on Build GRCh38 Loss AFG3L1P PRDM7 CENPBD1 DPEP1 RPL13 LOC105371419 LOC339059 ZNF778 GALNS TUBB8P7 TRAPPC2L MC1R SPATA33 LOC101927817 LOC400558 ZNF276 SNAI3 CPNE7 VPS9D1-AS1 CDT1 IL17C LOC100287036 DEF8 SPATA2L MVD FANCA APRT VPS9D1 TCF25 ACSF3 CDK10 SPIRE2 DBNDD1 LOC100129697 LOC107987238 LOC101927793 URAHP LOC107984817 CHMP1A ANKRD11 CYBA LOC105371414 FAM157C SLC22A31 SNORD68 CTU2 CDH15 SNAI3-AS1 MIR4722 LOC105371409 LOC100289580 GAS8 PABPN1L RNF166 SPG7 CBFA2T3 TUBB3 GAS8-AS1 PIEZO1 LINC00304
nsv509639 Chr.16:89513538 - 89775915 on Build GRCh38 Insertion SPATA33 VPS9D1 SNORD68 ZNF276 CDK10 DPEP1 RPL13 CPNE7 VPS9D1-AS1 CHMP1A SPG7 SPATA2L FANCA
nsv1931 Chr.16:89713649 - 89746701 on Build GRCh38 Insertion VPS9D1 VPS9D1-AS1 ZNF276 FANCA
esv2762221 Chr.16:89610380 - 90039318 on Build GRCh38 Gain+Loss AFG3L1P MC1R SPATA33 VPS9D1 TCF25 CENPBD1 ZNF276 CDK10 DPEP1 SPIRE2 DBNDD1 LOC105371419 VPS9D1-AS1 LOC107984817 CHMP1A GAS8 TUBB3 GAS8-AS1 DEF8 SPATA2L FANCA
dgv873e212 Chr.16:89734780 - 89738373 on Build GRCh38 Loss ZNF276 FANCA
nsv428331 Chr.16:89216635 - 90185980 on Build GRCh38 Gain+Loss AFG3L1P VPS9D1 PRDM7 TCF25 CENPBD1 CDK10 DPEP1 SPIRE2 DBNDD1 RPL13 LOC105371419 ZNF778 URAHP LOC107984817 CHMP1A ANKRD11 TUBB8P7 LOC105371414 FAM157C MC1R SPATA33 LOC101927817 SNORD68 ZNF276 CPNE7 VPS9D1-AS1 GAS8 SPG7 TUBB3 GAS8-AS1 LOC100287036 DEF8 SPATA2L FANCA
dgv875e212 Chr.16:89737043 - 89738817 on Build GRCh38 Loss ZNF276 FANCA
nsv833331 Chr.16:89726091 - 89849806 on Build GRCh38 Gain+Loss LOC105371419 LOC107984817 ZNF276 SPIRE2 FANCA
esv3572253 Chr.16:89737225 - 89738373 on Build GRCh38 Gain ZNF276 FANCA

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