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See other FANCA CNV Assays ›
Gene Symbol
FANCA
Assay Reference Genome
Location

Chr.16:89737809 on build GRCh38
Cytoband
16q24.3
Assay ID Hs00129070_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 2175

Gene Name:

 Fanconi anemia complementation group A

Gene Aliases:

 FA, FA-H, FA1, FAA, FACA, FAH, FANCH

Location:

 Chr.16:89737551-89816658 on Build GRCh38

Assay Gene Location:

 Within Exon 44
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
FANCA NM_000135.2 43 5202 NP_000126.2
NM_001286167.1 43 5206 NP_001273096.1
DQ574346.1
X99226.1 43 5191 CAA67610.1

Target Gene Details

Entrez Gene ID:

 92822

Gene Name:

 zinc finger protein 276

Gene Aliases:

 CENP-Z, CENPZ, ZADT, ZFP276, ZNF477

Location:

 Chr.16:89720368-89740925 on Build GRCh38

Assay Gene Location:

 Within Exon 13
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
ZNF276 NM_001113525.1 NP_001106997.1
NM_152287.3 NP_689500.2
NR_110122.1 10 1650
NR_110126.1
NR_110128.1
NR_110129.1
XM_005256324.3 XP_005256381.1
XM_005256328.3 XP_005256385.1
XM_017023890.1 XP_016879379.1
AK026482.1
AK056405.1 10 1601
AK096762.1
AK289801.1
AK295770.1
AK315793.1
BC032781.1 AAH32781.2
BC107603.1 AAI07604.1
BC110348.1 AAI10349.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv952079 Chr.16:89685593 - 89749492 on Build GRCh38 Deletion FANCA SPATA2L VPS9D1 VPS9D1-AS1 CDK10 ZNF276
nsv457623 Chr.16:89664419 - 89853617 on Build GRCh38 Gain FANCA SPATA2L VPS9D1 VPS9D1-AS1 LOC105371419 LOC107984817 SPATA33 SPIRE2 CDK10 ZNF276
dgv872e212 Chr.16:89731232 - 89738373 on Build GRCh38 Loss FANCA ZNF276
nsv833330 Chr.16:89678466 - 89741783 on Build GRCh38 Loss FANCA SPATA2L VPS9D1 VPS9D1-AS1 CDK10 ZNF276
nsv482951 Chr.16:88633593 - 90228345 on Build GRCh38 Loss CDT1 ZNF778 SNAI3-AS1 SPATA33 GAS8-AS1 LOC100129697 FAM157C DBNDD1 CYBA VPS9D1 LOC339059 SPIRE2 MVD CHMP1A TUBB3 FANCA MC1R URAHP TRAPPC2L LOC100289580 SPG7 PIEZO1 GAS8 LOC107987238 CBFA2T3 CDH15 ACSF3 ZNF276 LOC101927817 LOC105371414 APRT TCF25 LOC105371419 CENPBD1 LOC107984817 IL17C CTU2 LOC400558 SLC22A31 GALNS RNF166 DPEP1 ANKRD11 LOC100287036 RPL13 PABPN1L SPATA2L CPNE7 AFG3L1P DEF8 PRDM7 CDK10 TUBB8P7 SNAI3 SNORD68 VPS9D1-AS1 LOC105371409 MIR4722 LINC00304 LOC101927793
nsv509639 Chr.16:89513538 - 89775915 on Build GRCh38 Insertion FANCA RPL13 SPATA2L CPNE7 SPATA33 CDK10 SPG7 SNORD68 VPS9D1 VPS9D1-AS1 DPEP1 ZNF276 CHMP1A
nsv1931 Chr.16:89713649 - 89746701 on Build GRCh38 Insertion FANCA VPS9D1 VPS9D1-AS1 ZNF276
esv2762221 Chr.16:89610380 - 90039318 on Build GRCh38 Gain+Loss FANCA MC1R TCF25 SPATA2L LOC105371419 AFG3L1P DEF8 CENPBD1 LOC107984817 SPATA33 GAS8-AS1 CDK10 DBNDD1 VPS9D1 VPS9D1-AS1 GAS8 DPEP1 SPIRE2 ZNF276 CHMP1A TUBB3
dgv873e212 Chr.16:89734780 - 89738373 on Build GRCh38 Loss FANCA ZNF276
nsv428331 Chr.16:89216635 - 90185980 on Build GRCh38 Gain+Loss LOC105371414 TCF25 LOC105371419 CENPBD1 ZNF778 LOC107984817 SPATA33 GAS8-AS1 FAM157C DBNDD1 VPS9D1 DPEP1 SPIRE2 ANKRD11 CHMP1A TUBB3 LOC100287036 FANCA RPL13 MC1R SPATA2L CPNE7 AFG3L1P DEF8 URAHP PRDM7 CDK10 TUBB8P7 SPG7 SNORD68 VPS9D1-AS1 GAS8 ZNF276 LOC101927817
nsv833331 Chr.16:89726091 - 89849806 on Build GRCh38 Gain+Loss FANCA LOC105371419 LOC107984817 SPIRE2 ZNF276
dgv874e212 Chr.16:89737043 - 89738373 on Build GRCh38 Loss FANCA ZNF276
esv3572253 Chr.16:89737225 - 89738373 on Build GRCh38 Gain FANCA ZNF276

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