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See other FANCA CNV Assays ›
Gene Symbol
FANCA
Assay Reference Genome
Location

Chr.16:89738043 on build GRCh38
Cytoband
16q24.3
Assay ID Hs00131336_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 2175

Gene Name:

 Fanconi anemia complementation group A

Gene Aliases:

 FA, FA-H, FA1, FAA, FACA, FAH, FANCH

Location:

 Chr.16:89737551-89816658 on Build GRCh38

Assay Gene Location:

 Within Exon 44
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
FANCA NM_000135.2 43 4968 NP_000126.2
NM_001286167.1 43 4972 NP_001273096.1
X99226.1 43 4957 CAA67610.1

Target Gene Details

Entrez Gene ID:

 92822

Gene Name:

 zinc finger protein 276

Gene Aliases:

 CENP-Z, CENPZ, ZADT, ZFP276, ZNF477

Location:

 Chr.16:89720368-89740925 on Build GRCh38

Assay Gene Location:

 Within Exon 14
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
ZNF276 NM_001113525.1 11 1739 NP_001106997.1
NM_152287.3 11 1729 NP_689500.2
NR_110122.1 11 1814
NR_110126.1 11 1697
NR_110128.1 11 1620
NR_110129.1 11 1709
XM_005256324.3 11 1688 XP_005256381.1
XM_005256328.3 9 1369 XP_005256385.1
XM_017023890.1 10 1664 XP_016879379.1
AK026482.1 11 1679
AK056405.1 11 1765
AK096762.1 4 2318
AK289801.1 11 1588
AK295770.1 9 1401
AK315793.1 7 1166
BC032781.1 10 1398 AAH32781.2
BC107603.1 11 1554 AAI07604.1
BC110348.1 11 1454 AAI10349.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv952079 Chr.16:89685593 - 89749492 on Build GRCh38 Deletion VPS9D1-AS1 SPATA2L FANCA CDK10 VPS9D1 ZNF276
nsv457623 Chr.16:89664419 - 89853617 on Build GRCh38 Gain VPS9D1-AS1 SPIRE2 SPATA2L LOC105371419 FANCA CDK10 VPS9D1 ZNF276 SPATA33 LOC107984817
dgv872e212 Chr.16:89731232 - 89738373 on Build GRCh38 Loss FANCA ZNF276
nsv833330 Chr.16:89678466 - 89741783 on Build GRCh38 Loss VPS9D1-AS1 SPATA2L FANCA CDK10 VPS9D1 ZNF276
nsv482951 Chr.16:88633593 - 90228345 on Build GRCh38 Loss TUBB8P7 DPEP1 IL17C RNF166 ZNF276 LOC107984817 LOC400558 MVD URAHP SNAI3-AS1 GAS8 LOC105371419 LOC105371414 PRDM7 MIR4722 CBFA2T3 LOC107987238 LOC105371409 LOC101927793 LOC339059 SPIRE2 SLC22A31 GAS8-AS1 SPATA33 ACSF3 APRT CYBA CDT1 CTU2 LINC00304 LOC100129697 CHMP1A PIEZO1 SPATA2L FANCA CDK10 TRAPPC2L FAM157C LOC100289580 MC1R VPS9D1 CENPBD1 GALNS VPS9D1-AS1 CDH15 SPG7 DBNDD1 PABPN1L LOC101927817 TCF25 SNORD68 SNAI3 CPNE7 ZNF778 LOC100287036 TUBB3 AFG3L1P RPL13 ANKRD11 DEF8
nsv509639 Chr.16:89513538 - 89775915 on Build GRCh38 Insertion VPS9D1-AS1 DPEP1 SPG7 SPATA2L FANCA CDK10 ZNF276 SNORD68 SPATA33 CPNE7 RPL13 VPS9D1 CHMP1A
nsv1931 Chr.16:89713649 - 89746701 on Build GRCh38 Insertion VPS9D1-AS1 FANCA VPS9D1 ZNF276
esv2762221 Chr.16:89610380 - 90039318 on Build GRCh38 Gain+Loss VPS9D1-AS1 DPEP1 SPIRE2 DBNDD1 SPATA2L FANCA CDK10 ZNF276 TCF25 GAS8-AS1 SPATA33 LOC107984817 MC1R TUBB3 GAS8 LOC105371419 AFG3L1P VPS9D1 CENPBD1 DEF8 CHMP1A
dgv873e212 Chr.16:89734780 - 89738373 on Build GRCh38 Loss FANCA ZNF276
nsv428331 Chr.16:89216635 - 90185980 on Build GRCh38 Gain+Loss TUBB8P7 DPEP1 SPATA2L FANCA CDK10 ZNF276 LOC107984817 FAM157C URAHP MC1R GAS8 LOC105371419 VPS9D1 CENPBD1 LOC105371414 PRDM7 VPS9D1-AS1 SPIRE2 SPG7 DBNDD1 LOC101927817 TCF25 SNORD68 GAS8-AS1 SPATA33 CPNE7 ZNF778 LOC100287036 TUBB3 AFG3L1P RPL13 ANKRD11 DEF8 CHMP1A
nsv833331 Chr.16:89726091 - 89849806 on Build GRCh38 Gain+Loss SPIRE2 LOC105371419 FANCA ZNF276 LOC107984817
dgv874e212 Chr.16:89737043 - 89738373 on Build GRCh38 Loss FANCA ZNF276
esv3572253 Chr.16:89737225 - 89738373 on Build GRCh38 Gain FANCA ZNF276

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