Hs00132437_cn

• Gene Symbol: AGPAT2
• Assay Reference Genome Location: Chr.9:136673293 on build GRCh38
• Cytoband: 9q34.3

Target Gene Details

• Entrez Gene ID: 10555
• Gene Name: 1-acylglycerol-3-phosphate O-acyltransferase 2
• Gene Aliases: 1-AGPAT2, BSCL, BSCL1, LPAAB, LPAAT-beta
• Location: Chr.9:136673143-136687459 on Build GRCh38
• Assay Gene Location: Within Exon 6

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
AGPAT2	NM_001012727.1	5	1302	NP_001012745.1
	NM_006412.3	6	1398	NP_006403.2
	AF000237.1	6	1362	AAC51649.1
	AF011374.1	6	1356	AAB64299.1
	BC000026.2	6	1341	AAH00026.1
	BC004529.2	5	1236	AAH04529.1
	BC007269.1	4	973	AAH07269.1
	BC019292.1	6	1350	AAH19292.1
	U56418.2			AAB58776.2

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv13005n54	Chr.9:136605258 - 136696482 on Build GRCh38	Loss	EGFL7 AGPAT2 LINC01451 MIR126 HSPC324
esv32979	Chr.9:136666564 - 136674090 on Build GRCh38	Gain	EGFL7 AGPAT2 MIR126
nsv509334	Chr.9:136514168 - 136724663 on Build GRCh38	Insertion	MIR4673 EGFL7 NOTCH1 SNHG7 AGPAT2 LINC01451 FAM69B MIR126 MIR4674 HSPC324 NALT1
nsv951203	Chr.9:136562849 - 136770848 on Build GRCh38	Deletion	SNORA17A SNHG7 AGPAT2 LCN8 MIR6722 SNORA17B EGFL7 LCN15 LINC01451 FAM69B LCN6 MIR126 HSPC324 LOC100128593 LCN10
esv3545642	Chr.9:136672575 - 136673284 on Build GRCh38	Deletion	EGFL7 AGPAT2
esv2759720	Chr.9:136356377 - 136932033 on Build GRCh38	Loss	CCDC183-AS1 DNLZ NOTCH1 AGPAT2 CARD9 TRAF2 MIR6722 CCDC183 SDCCAG3 EGFL7 MIR4292 C9orf163 PMPCA LINC01451 INPP5E FAM69B LCN6 RABL6 HSPC324 LOC100128593 MAMDC4 MIR4479 SEC16A C9orf172 SNORA17A SNHG7 SNAPC4 PHPT1 EDF1 LCN8 MIR4674 GPSM1 NALT1 SNORA17B MIR4673 LCN15 TMEM141 MIR126 LCN10
nsv469918	Chr.9:136359865 - 137173890 on Build GRCh38	Loss	CCDC183-AS1 DNLZ AGPAT2 TRAF2 MIR6722 FUT7 MAN1B1 UAP1L1 SDCCAG3 ABCA2 C9orf163 PMPCA FAM69B LCN6 RABL6 MAMDC4 MIR4479 FBXW5 C9orf142 SNORA17A SNAPC4 PHPT1 MIR3621 MAN1B1-AS1 NALT1 LOC101930307 SNORA17B PRR31 MIR4673 ENTPD2 LRRC26 DPP7 NOTCH1 CARD9 LCN12 C9orf139 LCNL1 CCDC183 EGFL7 MIR4292 LINC01451 INPP5E HSPC324 GRIN1 LOC100128593 TMEM210 SEC16A NPDC1 CLIC3 C9orf172 SNHG7 EDF1 LCN8 MIR4674 LCN15 TMEM141 PTGDS SAPCD2 C8G MIR126 LCN10
nsv8579	Chr.9:136505432 - 136760256 on Build GRCh38	Gain	NOTCH1 SNORA17A SNHG7 AGPAT2 LCN8 MIR4674 MIR6722 NALT1 SNORA17B MIR4673 EGFL7 LCN15 LINC01451 FAM69B LCN6 MIR126 HSPC324 LOC100128593 LCN10
dgv955n27	Chr.9:136583078 - 136676165 on Build GRCh38	Loss	EGFL7 AGPAT2 LINC01451 MIR126 HSPC324
nsv1053781	Chr.9:136590694 - 136722927 on Build GRCh38	Gain	EGFL7 AGPAT2 LINC01451 FAM69B MIR126 HSPC324
dgv13006n54	Chr.9:136619086 - 136725859 on Build GRCh38	Loss	EGFL7 SNHG7 AGPAT2 FAM69B MIR126 HSPC324
esv2422220	Chr.9:136584135 - 137350098 on Build GRCh38	Deletion	CCDC183-AS1 TMEM203 AGPAT2 STPG3 TRAF2 MIR6722 FUT7 MAN1B1 ANAPC2 UAP1L1 ABCA2 FAM69B LCN6 RABL6 RNF208 MAMDC4 MIR4479 FBXW5 TUBB4B C9orf142 SNORA17A PHPT1 NDOR1 MIR3621 SSNA1 TPRN MAN1B1-AS1 LOC101930307 SNORA17B PRR31 FAM166A C9orf173-AS1 ENTPD2 LRRC26 NELFB TOR4A DPP7 LCN12 C9orf139 LCNL1 EXD3 CCDC183 EGFL7 MIR4292 SLC34A3 LINC01451 RNF224 HSPC324 GRIN1 LOC100128593 TMEM210 NRARP NPDC1 CLIC3 C9orf172 CYSRT1 SNHG7 EDF1 LCN8 LCN15 TMEM141 PTGDS SAPCD2 C8G MIR126 LCN10

More Information

• Set Membership: Intragenic, Exonic, DGV Variation

Panther Classification:

Molecular Function -

acyltransferase

Gene Ontology Categories:

Process(es)

positive regulation of cytokine production
positive regulation of cytokine-mediated signaling pathway
phospholipid metabolic process
phosphatidic acid biosynthetic process
epidermis development
CDP-diacylglycerol biosynthetic process
triglyceride biosynthetic process
response to antidepressant

Function(s)

1-acylglycerol-3-phosphate O-acyltransferase activity