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Gene Symbol
CCHCR1
Assay Reference Genome
Location

Chr.6:31143293 on build GRCh38
Cytoband
6p21.33
Assay ID Hs00144632_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 54535

Gene Name:

 coiled-coil alpha-helical rod protein 1

Gene Aliases:

 C6orf18, HCR, SBP

Location:

 Chr.6:31142439-31158238 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 18 - Exon 18
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
CCHCR1 NM_001105563.1 NP_001099033.1
NM_001105564.1 NP_001099034.1
NM_019052.3 NP_061925.2
XM_011514702.2 XP_011513004.1
XM_011514703.1 XP_011513005.1
XM_011514704.2 XP_011513006.1
XM_011514705.1 XP_011513007.1
XM_017010961.1 XP_016866450.1
XM_017010962.1 XP_016866451.1
XM_017010963.1 XP_016866452.1
XM_017010964.1 XP_016866453.1
XM_017010965.1 XP_016866454.1
XM_017010966.1 XP_016866455.1
XM_017010967.1 XP_016866456.1
XM_017010968.1 XP_016866457.1
XM_017010969.1 XP_016866458.1
XM_017010970.1 XP_016866459.1
AB029331.1 BAA81890.1
AB112474.1 BAD05130.1
AB112475.1 BAD05131.1
AF216493.1 AAF74221.1
AK000204.1 BAA91007.1
AK000217.1 BAA91016.1
AK000533.1 BAA91236.1
AK289446.1
AK295494.1
AY029160.1 AAK55759.1
BC110534.1 AAI10535.1
BC110535.1 AAI10536.1
CR457227.1 CAG33508.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv525933 Chr.6:31113428 - 31174468 on Build GRCh38 Loss TCF19 POU5F1 PSORS1C2 PSORS1C3 PSORS1C1 CCHCR1 CDSN
nsv1074389 Chr.6:29116522 - 31446623 on Build GRCh38 Deletion HLA-K RPP21 LOC554223 LOC105375014 OR12D2 ABCF1 HLA-E HLA-A OR2J2 MRPS18B OR10C1 HLA-F-AS1 MUC21 HLA-J TRIM40 HCG20 TRIM10 OR2H1 LOC101929006 MIR877 ATAT1 HLA-H HCG4 MDC1-AS1 MOG GNL1 C6orf136 GTF2H4 C6orf15 HLA-B PSORS1C1 LINC01015 HCG8 HLA-L PSORS1C2 MIR6891 HLA-F ZFP57 DPCR1 TRIM39-RPP21 ZNRD1 HLA-G TRIM15 MIR4640 GABBR1 OR5V1 MDC1 LINC00243 CCHCR1 CDSN MUC22 MAS1L POU5F1 HCG22 IFITM4P PPP1R10 NRM VARS2 PSORS1C3 OR2H2 TRIM31 HLA-C OR12D3 SNORD32B MICA OR11A1 TRIM39 IER3 UBD HCG27 SFTA2 FLOT1 HCG18 PRR3 HCG9 TCF19 RNF39 HCG17 PPP1R18 DHX16 TRIM26 HCG4B ZNRD1ASP OR14J1 TUBB DDR1 PPP1R11 TRIM31-AS1
nsv601481 Chr.6:30454855 - 31316476 on Build GRCh38 Loss MIR4640 LOC105375014 MDC1 LINC00243 CCHCR1 CDSN MUC22 ABCF1 HLA-E MRPS18B POU5F1 HCG22 MUC21 PPP1R10 NRM VARS2 PSORS1C3 HCG20 HLA-C MIR877 ATAT1 MDC1-AS1 GNL1 C6orf136 GTF2H4 IER3 C6orf15 HCG27 SFTA2 FLOT1 PSORS1C1 PRR3 TCF19 PSORS1C2 PPP1R18 DHX16 DPCR1 TUBB DDR1
nsv428140 Chr.6:31060513 - 31494329 on Build GRCh38 Gain+Loss LOC102725068 HCP5 C6orf15 HCG27 HLA-B PSORS1C1 CCHCR1 CDSN TCF19 HCG26 POU5F1 PSORS1C2 MIR6891 PSORS1C3 HLA-C MICA
nsv524061 Chr.6:31139310 - 31166166 on Build GRCh38 Loss TCF19 POU5F1 PSORS1C2 PSORS1C1 CCHCR1
nsv1122126 Chr.6:28628023 - 31244023 on Build GRCh38 Deletion HLA-K RPP21 LOC554223 LOC105375014 OR12D2 ABCF1 HLA-E HLA-A OR2J2 MRPS18B OR10C1 HLA-F-AS1 MUC21 HLA-J TRIM40 TRIM27 HCG20 TRIM10 OR2H1 LOC101929006 MIR877 ATAT1 HLA-H HCG4 MDC1-AS1 MOG GNL1 C6orf136 GTF2H4 C6orf15 PSORS1C1 LINC01015 OR2J3 HCG8 HLA-L PSORS1C2 HLA-F ZFP57 DPCR1 TRIM39-RPP21 ZNRD1 HLA-G TRIM15 ZNF311 MIR4640 GABBR1 OR5V1 MDC1 LINC00243 CCHCR1 CDSN MUC22 MAS1L POU5F1 HCG22 HCG16 IFITM4P PPP1R10 NRM OR2W1 VARS2 PSORS1C3 OR2H2 TRIM31 OR12D3 SNORD32B OR11A1 OR2B3 TRIM39 IER3 LOC100129636 UBD HCG27 SFTA2 FLOT1 HCG18 LINC01556 PRR3 HCG9 TCF19 LINC00533 LINC01623 HCG14 RNF39 HCG17 PPP1R18 DHX16 TRIM26 HCG4B ZNRD1ASP OR14J1 TUBB DDR1 PPP1R11 TRIM31-AS1
nsv1144137 Chr.6:29720323 - 31338123 on Build GRCh38 Deletion HLA-K RPP21 LOC554223 LOC105375014 ABCF1 HLA-E HLA-A MRPS18B HLA-F-AS1 MUC21 HLA-J TRIM40 HCG20 TRIM10 MIR877 ATAT1 HLA-H HCG4 MDC1-AS1 GNL1 C6orf136 GTF2H4 C6orf15 PSORS1C1 HCG8 HLA-L PSORS1C2 HLA-F DPCR1 TRIM39-RPP21 ZNRD1 HLA-G TRIM15 MIR4640 MDC1 LINC00243 CCHCR1 CDSN MUC22 POU5F1 HCG22 IFITM4P PPP1R10 NRM VARS2 PSORS1C3 TRIM31 HLA-C TRIM39 IER3 HCG27 SFTA2 FLOT1 HCG18 PRR3 HCG9 TCF19 RNF39 HCG17 PPP1R18 DHX16 TRIM26 HCG4B ZNRD1ASP TUBB DDR1 PPP1R11 TRIM31-AS1
nsv601264 Chr.6:29883666 - 31320716 on Build GRCh38 Loss HLA-K RPP21 LOC105375014 ABCF1 HLA-E HLA-A MRPS18B MUC21 HLA-J TRIM40 HCG20 TRIM10 MIR877 ATAT1 HLA-H MDC1-AS1 GNL1 C6orf136 GTF2H4 C6orf15 PSORS1C1 HCG8 HLA-L PSORS1C2 DPCR1 TRIM39-RPP21 ZNRD1 TRIM15 MIR4640 MDC1 LINC00243 CCHCR1 CDSN MUC22 POU5F1 HCG22 PPP1R10 NRM VARS2 PSORS1C3 TRIM31 HLA-C TRIM39 IER3 HCG27 SFTA2 FLOT1 HCG18 PRR3 HCG9 TCF19 RNF39 HCG17 PPP1R18 DHX16 TRIM26 HCG4B ZNRD1ASP TUBB DDR1 PPP1R11 TRIM31-AS1
esv2731791 Chr.6:30404802 - 31346410 on Build GRCh38 Deletion MIR4640 LOC105375014 MDC1 LINC00243 CCHCR1 CDSN MUC22 ABCF1 HLA-E MRPS18B POU5F1 HCG22 MUC21 PPP1R10 NRM VARS2 PSORS1C3 HCG20 HLA-C MIR877 ATAT1 MDC1-AS1 GNL1 C6orf136 GTF2H4 IER3 C6orf15 HCG27 SFTA2 FLOT1 PSORS1C1 PRR3 TCF19 PSORS1C2 PPP1R18 DHX16 DPCR1 TUBB DDR1
dgv1174e214 Chr.6:31139843 - 31176217 on Build GRCh38 Gain TCF19 POU5F1 PSORS1C3 PSORS1C1 CCHCR1
esv3411275 Chr.6:29981607 - 31490616 on Build GRCh38 Duplication RPP21 LOC105375014 ABCF1 HLA-E MRPS18B HCG26 MUC21 HLA-J TRIM40 HCG20 TRIM10 MIR877 ATAT1 HCP5 MDC1-AS1 GNL1 C6orf136 GTF2H4 C6orf15 HLA-B PSORS1C1 HCG8 HLA-L PSORS1C2 MIR6891 DPCR1 TRIM39-RPP21 ZNRD1 LOC102725068 TRIM15 MIR4640 MDC1 LINC00243 CCHCR1 CDSN MUC22 POU5F1 HCG22 PPP1R10 NRM VARS2 PSORS1C3 TRIM31 HLA-C MICA TRIM39 IER3 HCG27 SFTA2 FLOT1 HCG18 PRR3 TCF19 RNF39 HCG17 PPP1R18 DHX16 TRIM26 ZNRD1ASP TUBB DDR1 PPP1R11 TRIM31-AS1

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More Information


Set Membership:

 Intragenic Non-exonic DGV Variation

Gene Ontology Categories:

Function(s)


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