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Gene Symbol
AGPAT1
Assay Reference Genome
Location

Chr.6:32170204 on build GRCh38
Cytoband
6p21.32
Assay ID Hs00145100_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 10554

Gene Name:

 1-acylglycerol-3-phosphate O-acyltransferase 1

Gene Aliases:

 1-AGPAT1, G15, LPAAT-alpha, LPAATA

Location:

 Chr.6:32168206-32178111 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 8 - Exon 8
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
AGPAT1 NM_006411.3 NP_006402.1
NM_032741.4 NP_116130.2
XM_005248805.3 XP_005248862.1
XM_005248806.2 XP_005248863.1
XM_011514234.1 XP_011512536.1
AF007145.1 AAC19153.1
AF218034.1 AAG17276.1
AK056346.1
AK058025.1
AK129818.1
AK299252.1
AK315950.1
BC002402.2 AAH02402.1
BC003007.1 AAH03007.1
BC004310.1 AAH04310.1
BC090849.1 AAH90849.1
U56417.1 AAB58775.1
U75971.1 AAB96378.1
Y09565.1 CAA70758.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv830629 Chr.6:32076201 - 32222010 on Build GRCh38 Loss MIR6721 PRRT1 AGPAT1 FKBPL MIR6833 ATF6B TNXB NOTCH4 GPSM3 AGER EGFL8 PPT2-EGFL8 RNF5 PPT2 PBX2 LOC100507547
dgv10463n54 Chr.6:31817661 - 32683279 on Build GRCh38 Loss PRRT1 HLA-DQB1-AS1 AGPAT1 EHMT2 HLA-DRB5 C4B HCG23 EGFL8 C4A C6orf48 TNXA NEU1 NELFE FKBPL TNXB MIR1236 CFB HLA-DQA1 HLA-DQB1 CYP21A2 HSPA1A BTNL2 HLA-DRB1 LOC101929163 RNF5 SLC44A4 PPT2 MIR6721 SKIV2L SNORD52 C6orf10 GPSM3 SNORD48 PBX2 CYP21A1P STK19 HLA-DRA C2 MIR6833 ATF6B C2-AS1 HLA-DRB6 NOTCH4 ZBTB12 AGER PPT2-EGFL8 HSPA1B DXO LOC100507547
dgv10472n54 Chr.6:31985690 - 32812026 on Build GRCh38 Loss MIR6721 PRRT1 HLA-DQB1-AS1 AGPAT1 HLA-DRB5 MIR3135B C4B C6orf10 HCG23 GPSM3 EGFL8 C4A TNXA PBX2 CYP21A1P HLA-DRA FKBPL MIR6833 ATF6B TNXB HLA-DRB6 HLA-DQA1 HLA-DQA2 HLA-DQB1 CYP21A2 HLA-DQB2 NOTCH4 BTNL2 AGER PPT2-EGFL8 HLA-DRB1 LOC101929163 RNF5 PPT2 LOC100507547
esv2759415 Chr.6:31903735 - 32241336 on Build GRCh38 Gain+Loss MIR6721 PRRT1 SKIV2L AGPAT1 C4B GPSM3 EGFL8 C4A TNXA PBX2 CYP21A1P STK19 NELFE FKBPL C2 MIR6833 ATF6B TNXB C2-AS1 MIR1236 CFB CYP21A2 NOTCH4 AGER PPT2-EGFL8 RNF5 DXO PPT2 LOC100507547
nsv1126749 Chr.6:31457323 - 32594423 on Build GRCh38 Deletion MSH5 LY6G6E PRRT1 LY6G5C SAPCD1-AS1 CLIC1 AGPAT1 EHMT2 SNORA38 HLA-DRB5 NFKBIL1 C4B GPANK1 HCG23 EGFL8 C4A C6orf48 TNXA SNORD117 DDX39B-AS1 AIF1 NEU1 SNORD84 NELFE FKBPL CSNK2B DDAH2 TNXB MICB MIR1236 CFB APOM CYP21A2 HSPA1A MIR6832 ATP6V1G2-DDX39B BTNL2 HLA-DRB1 LOC101929163 RNF5 SLC44A4 PPT2 LOC102725068 HCG26 PRRC2A MIR6721 LST1 SKIV2L LTB MCCD1 ATP6V1G2 HSPA1L SNORD52 C6orf47 VARS LY6G6F VWA7 C6orf10 LTA LOC100287329 GPSM3 ABHD16A SNORD48 SAPCD1 LY6G5B C6orf25 MIR4646 HCP5 PBX2 CYP21A1P TNF STK19 LY6G6D BAG6 LY6G6C HLA-DRA C2 MIR6833 ATF6B C2-AS1 NCR3 HLA-DRB6 NOTCH4 DDX39B ZBTB12 AGER LSM2 PPT2-EGFL8 HSPA1B DXO LOC100507547 MSH5-SAPCD1
nsv1073969 Chr.6:31456422 - 33480523 on Build GRCh38 Deletion MSH5 PRRT1 HLA-DQB1-AS1 CLIC1 HLA-DPA1 EHMT2 HLA-DRB5 NFKBIL1 GPANK1 RXRB HCG23 HCG24 PPP1R2P1 C4A HCG25 TNXA SNORD117 AIF1 RPS18 SNORD84 NELFE FKBPL DDAH2 PSMB8 TAP2 PSMB8-AS1 HLA-DQA1 APOM ATP6V1G2-DDX39B BTNL2 RNF5 LOC102725068 CUTA ZBTB9 PRRC2A HLA-DOA MIR6721 ATP6V1G2 HSPA1L SNORD52 LTA GPSM3 ABHD16A SNORD48 PHF1 MIR4646 HLA-DOB HCP5 CYP21A1P TNF SLC39A7 LY6G6C VPS52 C2-AS1 NCR3 HLA-DRB6 DAXX KIFC1 HLA-DQA2 HLA-DQB2 NOTCH4 PPT2-EGFL8 HSPA1B DXO HLA-DPB1 LOC100507547 ZBTB22 MIR6834 MSH5-SAPCD1 LY6G6E LY6G5C SAPCD1-AS1 AGPAT1 COL11A2 SNORA38 MIR3135B C4B EGFL8 C6orf48 LOC100294145 DDX39B-AS1 WDR46 NEU1 CSNK2B HSD17B8 TNXB MICB MIR1236 BRD2 CFB HLA-DQB1 CYP21A2 HSPA1A TAP1 MIR6832 HLA-DMA HLA-DRB1 RING1 LOC101929163 SLC44A4 PPT2 HCG26 MIR5004 HLA-DMB LST1 SKIV2L LTB MCCD1 C6orf47 VARS LY6G6F VWA7 C6orf10 PSMB9 LOC100287329 SAPCD1 LY6G5B C6orf25 PBX2 B3GALT4 STK19 LY6G6D BAG6 HLA-DRA C2 SYNGAP1 PFDN6 MIR6833 ATF6B HLA-DPB2 MIR6873 TAPBP DDX39B ZBTB12 AGER LSM2 MIR219A1 RGL2
nsv602104 Chr.6:32096949 - 32203906 on Build GRCh38 Loss MIR6721 PRRT1 AGPAT1 FKBPL MIR6833 ATF6B TNXB NOTCH4 GPSM3 AGER EGFL8 PPT2-EGFL8 RNF5 PPT2 PBX2 LOC100507547
nsv1112900 Chr.6:31455323 - 33480423 on Build GRCh38 Deletion MSH5 PRRT1 HLA-DQB1-AS1 CLIC1 HLA-DPA1 EHMT2 HLA-DRB5 NFKBIL1 GPANK1 RXRB HCG23 HCG24 PPP1R2P1 C4A HCG25 TNXA SNORD117 AIF1 RPS18 SNORD84 NELFE FKBPL DDAH2 PSMB8 TAP2 PSMB8-AS1 HLA-DQA1 APOM ATP6V1G2-DDX39B BTNL2 RNF5 LOC102725068 CUTA ZBTB9 PRRC2A HLA-DOA MIR6721 ATP6V1G2 HSPA1L SNORD52 LTA GPSM3 ABHD16A SNORD48 PHF1 MIR4646 HLA-DOB HCP5 CYP21A1P TNF SLC39A7 LY6G6C VPS52 C2-AS1 NCR3 HLA-DRB6 DAXX KIFC1 HLA-DQA2 HLA-DQB2 NOTCH4 PPT2-EGFL8 HSPA1B DXO HLA-DPB1 LOC100507547 ZBTB22 MIR6834 MSH5-SAPCD1 LY6G6E LY6G5C SAPCD1-AS1 AGPAT1 COL11A2 SNORA38 MIR3135B C4B EGFL8 C6orf48 LOC100294145 DDX39B-AS1 WDR46 NEU1 CSNK2B HSD17B8 TNXB MICB MIR1236 BRD2 CFB HLA-DQB1 CYP21A2 HSPA1A TAP1 MIR6832 HLA-DMA HLA-DRB1 RING1 LOC101929163 SLC44A4 PPT2 HCG26 MIR5004 HLA-DMB LST1 SKIV2L LTB MCCD1 C6orf47 VARS LY6G6F VWA7 C6orf10 PSMB9 LOC100287329 SAPCD1 LY6G5B C6orf25 PBX2 B3GALT4 STK19 LY6G6D BAG6 HLA-DRA C2 SYNGAP1 PFDN6 MIR6833 ATF6B HLA-DPB2 MIR6873 TAPBP DDX39B ZBTB12 AGER LSM2 MIR219A1 RGL2
dgv10404n54 Chr.6:31312550 - 32516591 on Build GRCh38 Loss MSH5 LY6G6E PRRT1 LY6G5C SAPCD1-AS1 CLIC1 AGPAT1 EHMT2 SNORA38 NFKBIL1 C4B GPANK1 HCG23 EGFL8 C4A C6orf48 TNXA SNORD117 DDX39B-AS1 AIF1 NEU1 SNORD84 NELFE FKBPL CSNK2B DDAH2 TNXB MICB MIR1236 CFB APOM CYP21A2 HSPA1A MIR6832 ATP6V1G2-DDX39B BTNL2 LOC101929163 RNF5 SLC44A4 PPT2 LOC102725068 HCG26 PRRC2A MIR6721 LST1 SKIV2L LTB MCCD1 ATP6V1G2 HSPA1L SNORD52 C6orf47 VARS LY6G6F VWA7 C6orf10 LTA LOC100287329 GPSM3 ABHD16A SNORD48 SAPCD1 LY6G5B MIR6891 C6orf25 MIR4646 HCP5 PBX2 CYP21A1P TNF STK19 LY6G6D BAG6 LY6G6C HLA-DRA C2 HLA-B MIR6833 ATF6B C2-AS1 NCR3 NOTCH4 DDX39B ZBTB12 MICA AGER LSM2 PPT2-EGFL8 HSPA1B DXO LOC100507547 MSH5-SAPCD1

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