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See other ZGPAT CNV Assays ›
Gene Symbol
ZGPAT
Assay Reference Genome
Location

Chr.20:63708596 on build GRCh38
Cytoband
20q13.33
Assay ID Hs00149004_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 84619

Gene Name:

 zinc finger CCCH-type and G-patch domain containing

Gene Aliases:

 GPATC6, GPATCH6, KIAA1847, ZC3H9, ZC3HDC9, ZIP

Location:

 Chr.20:63707442-63736142 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 2 - Exon 3
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
ZGPAT NM_001083113.1 NP_001076582.1
NM_001195653.1 NP_001182582.1
NM_001195654.1 NP_001182583.1
NM_032527.4 NP_115916.3
NM_181485.2 NP_852150.2
AB058750.3
AK027878.1 BAB55426.1
AK074961.1 BAC11317.1
AK307368.1
AK314726.1
BC019338.1 AAH19338.1
BC032612.1 AAH32612.1
CV027894.1
DA055150.1
DA252406.1
DA848516.1
DB025637.1
KU178806.1
KU178807.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv953308 Chr.20:63650148 - 63831847 on Build GRCh38 Deletion ZBTB46-AS1 ARFRP1 RTEL1 ZBTB46 LIME1 STMN3 RTEL1-TNFRSF6B ZGPAT TNFRSF6B SLC2A4RG
nsv1160690 Chr.20:63639552 - 63744287 on Build GRCh38 Deletion ARFRP1 RTEL1 ZBTB46 LIME1 STMN3 RTEL1-TNFRSF6B ZGPAT TNFRSF6B SLC2A4RG
nsv428381 Chr.20:63583375 - 64334167 on Build GRCh38 Gain+Loss MIR647 MIR1914 RGS19 ARFRP1 MIR941-3 UCKL1 SOX18 NPBWR2 MYT1 LINC00176 SLC2A4RG C20orf181 ZNF512B LKAAEAR1 RTEL1 SAMD10 OPRL1 LIME1 MIR941-1 TNFRSF6B ZBTB46-AS1 UCKL1-AS1 MIR941-5 LINC00266-1 MIR941-4 STMN3 RTEL1-TNFRSF6B ZGPAT PCMTD2 TCEA2 LOC100505771 ZBTB46 ABHD16B DNAJC5 GMEB2 TPD52L2 MIR941-2 MIR6813 PRPF6
nsv828801 Chr.20:63706624 - 63731055 on Build GRCh38 Loss ARFRP1 ZGPAT
nsv586611 Chr.20:63680946 - 63709340 on Build GRCh38 Loss ARFRP1 RTEL1 RTEL1-TNFRSF6B ZGPAT TNFRSF6B
nsv470563 Chr.20:63486715 - 63793308 on Build GRCh38 Loss ARFRP1 EEF1A2 SRMS STMN3 PPDPF RTEL1-TNFRSF6B ZGPAT SLC2A4RG FNDC11 LOC100505771 RTEL1 ZBTB46 LIME1 GMEB2 PTK6 TNFRSF6B HELZ2
esv2758806 Chr.20:63470996 - 63745014 on Build GRCh38 Gain+Loss ARFRP1 EEF1A2 SRMS STMN3 PPDPF RTEL1-TNFRSF6B KCNQ2 ZGPAT SLC2A4RG FNDC11 LOC100505771 RTEL1 ZBTB46 LIME1 GMEB2 PTK6 TNFRSF6B HELZ2

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