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See other SSU72 CNV Assays ›
Gene Symbol
SSU72
Assay Reference Genome
Location

Chr.1:1541673 on build GRCh38
Cytoband
1p36.33
Assay ID Hs00160005_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 29101

Gene Name:

 SSU72 homolog, RNA polymerase II CTD phosphatase

Gene Aliases:

 HSPC182, PNAS-120

Location:

 Chr.1:1541673-1574882 on Build GRCh38

Assay Gene Location:

 Overlaps - Exon 5
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SSU72 NM_014188.2 NP_054907.1
AF161530.1 AAF29145.1
AJ276409.1 CAC81713.1
AK001809.1 BAA91921.1
AK127149.1
BC008070.2 AAH08070.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv545000 Chr.1:1421170 - 1573654 on Build GRCh38 Loss TMEM88B SSU72 ATAD3C TMEM240 LOC102724312 VWA1 ATAD3A ATAD3B ANKRD65 LOC107985729
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss HES4 FAM41C C1orf159 AURKAIP1 ANKRD65 MIB2 TMEM88B SSU72 SLC35E2 TTLL10 CPSF3L MRPL20 TAS1R3 LOC100288175 LOC100130417 FNDC10 MIR200A MIR6727 LINC01128 ATAD3A MIR200B UBE2J2 LOC105378948 LOC284600 MXRA8 CPTP PLEKHN1 ATAD3B LOC107985728 AGRN ATAD3C CDK11B PUSL1 RNF223 LOC100287934 LOC107985729 NOC2L NADK SAMD11 LOC102724312 VWA1 MIR6726 MMP23A CDK11A LINC01342 LOC148413 TTLL10-AS1 KLHL17 SDF4 CCNL2 MIR429 MIR6808 MMP23B DVL1 LOC100288069 LINC00115 ISG15 FAM87B SLC35E2B TNFRSF4 ACAP3 SCNN1D FAM132A B3GALT6 TMEM240 PERM1 TNFRSF18
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss TMEM52 HES4 C1orf159 AURKAIP1 TTLL10 WASH7P CPSF3L MRPL20 LOC101928626 LOC100288175 OR4F29 LOC100130417 MIR6727 LINC01128 MIR200B LOC729737 MTND2P28 LOC284600 MTND1P23 CPTP LOC100132287 LOC105378949 LOC105378589 GNB1 PUSL1 RNF223 LOC100287934 MIR6723 LOC107985729 NOC2L PRKCZ LOC100506504 LOC102724312 VWA1 MIR6726 MMP23A CDK11A LINC01342 OR4F5 LOC100129534 LOC148413 TTLL10-AS1 KLHL17 LOC102725121 CCNL2 LOC107984841 MIR6808 MMP23B MIR1302-2 SLC35E2B TNFRSF4 ACAP3 SCNN1D FAM132A TMEM240 PERM1 CFAP74 FAM41C LOC100133331 LOC105378592 ANKRD65 MIB2 FAAP20 TMEM88B SSU72 SLC35E2 CALML6 TAS1R3 MIR6859-1 FNDC10 FAM138A MIR200A MORN1 MIR6859-2 ATAD3A UBE2J2 LOC105378948 MXRA8 OR4F16 SKI PLEKHN1 ATAD3B LOC107985728 AGRN GABRD ATAD3C CDK11B LOC105378591 LOC100134822 NADK SAMD11 SDF4 MIR429 DVL1 LOC100288069 LINC00115 ISG15 FAM87B B3GALT6 DDX11L1 LOC105378947 TNFRSF18
nsv950452 Chr.1:1106921 - 1637538 on Build GRCh38 Deletion ATAD3C CDK11B PUSL1 C1orf159 AURKAIP1 ANKRD65 MIB2 LOC107985729 TMEM88B SSU72 TTLL10 LOC102724312 VWA1 MIR6726 LINC01342 CPSF3L MRPL20 LOC148413 TTLL10-AS1 TAS1R3 SDF4 CCNL2 MIR429 FNDC10 MIR200A MIR6727 MIR6808 MMP23B DVL1 ATAD3A MIR200B UBE2J2 TNFRSF4 ACAP3 MXRA8 CPTP SCNN1D FAM132A B3GALT6 TMEM240 TNFRSF18 ATAD3B
nsv1011818 Chr.1:1394332 - 1575421 on Build GRCh38 Gain LOC148413 ATAD3C CCNL2 ATAD3A ANKRD65 LOC107985729 TMEM88B SSU72 TMEM240 LOC102724312 VWA1 MRPL20 ATAD3B
esv2758913 Chr.1:1389149 - 2092899 on Build GRCh38 Gain+Loss TMEM52 GABRD ATAD3C CDK11B LOC105378589 GNB1 LOC105378591 ANKRD65 MIB2 LOC107985729 TMEM88B PRKCZ SSU72 SLC35E2 CALML6 NADK LOC102724312 VWA1 MMP23A CDK11A MRPL20 LOC148413 CCNL2 FNDC10 MMP23B ATAD3A SLC35E2B TMEM240 LOC105378949 CFAP74 ATAD3B

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More Information


Set Membership:

 Intragenic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

protein phosphatase

Gene Ontology Categories:

Function(s) Process(es)


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