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See other SSU72 CNV Assays ›
Gene Symbol
SSU72
Assay Reference Genome
Location

Chr.1:1541673 on build GRCh38
Cytoband
1p36.33
Assay ID Hs00160005_cn
Size
Availability Made To Order
Catalog # 4400291
Price 4,505.00
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4505.0
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Assay Details

Target Gene Details

Entrez Gene ID:

 29101

Gene Name:

 SSU72 homolog, RNA polymerase II CTD phosphatase

Gene Aliases:

 HSPC182, PNAS-120

Location:

 Chr.1:1541673-1574882 on Build GRCh38

Assay Gene Location:

 Overlaps - Exon 5
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SSU72 NM_014188.2 NP_054907.1
AF161530.1 AAF29145.1
AJ276409.1 CAC81713.1
AK001809.1 BAA91921.1
AK127149.1
BC008070.2 AAH08070.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv545000 Chr.1:1421170 - 1573654 on Build GRCh38 Loss VWA1 TMEM240 LOC107985729 TMEM88B ATAD3C ANKRD65 ATAD3B ATAD3A LOC102724312 SSU72
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss LOC100288175 LINC00115 SCNN1D MIR200B TMEM240 SAMD11 FAM132A HES4 C1orf159 MIR6726 B3GALT6 LOC100287934 CPTP SDF4 TNFRSF18 ATAD3C TAS1R3 ATAD3A LOC107985728 SLC35E2B PUSL1 MIR6808 SLC35E2 NADK CDK11B LINC01342 MXRA8 NOC2L FNDC10 LOC100288069 KLHL17 MRPL20 MMP23B CCNL2 MIR200A ANKRD65 ATAD3B AURKAIP1 ISG15 VWA1 LOC107985729 LOC148413 LOC102724312 ACAP3 SSU72 MIR429 CDK11A TTLL10-AS1 UBE2J2 MMP23A TTLL10 FAM41C LOC100130417 MIB2 LOC284600 PERM1 LOC105378948 LINC01128 TNFRSF4 RNF223 CPSF3L PLEKHN1 DVL1 MIR6727 AGRN TMEM88B FAM87B
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss LINC00115 LOC101928626 TMEM240 LOC105378591 C1orf159 MIR6726 B3GALT6 TMEM52 SDF4 MIR6859-1 ATAD3C LOC107985728 OR4F5 SLC35E2B CFAP74 MIR6859-2 MIR6808 PRKCZ CDK11B LINC01342 NOC2L LOC105378949 MRPL20 MMP23B CCNL2 AURKAIP1 FAAP20 WASH7P LOC107985729 LOC148413 ACAP3 SSU72 MIR429 TTLL10-AS1 LOC100506504 UBE2J2 MMP23A FAM41C LOC729737 LOC100134822 OR4F16 LOC100130417 MORN1 LOC105378592 TNFRSF4 FAM87B GNB1 LOC100288175 SCNN1D MIR200B SAMD11 FAM132A HES4 LOC100287934 CPTP LOC105378947 TNFRSF18 GABRD LOC100132287 TAS1R3 ATAD3A LOC107984841 PUSL1 MTND1P23 SLC35E2 CALML6 NADK MIR6723 MXRA8 LOC100133331 FNDC10 LOC100288069 OR4F29 KLHL17 MIR200A ANKRD65 ATAD3B MTND2P28 ISG15 VWA1 LOC102724312 FAM138A CDK11A DDX11L1 MIR1302-2 TTLL10 LOC105378589 MIB2 LOC284600 LOC102725121 PERM1 LOC105378948 LINC01128 SKI RNF223 CPSF3L PLEKHN1 DVL1 MIR6727 LOC100129534 AGRN TMEM88B
nsv950452 Chr.1:1106921 - 1637538 on Build GRCh38 Deletion VWA1 SCNN1D MIR200B TMEM240 LOC107985729 LOC148413 FAM132A LOC102724312 C1orf159 ACAP3 SSU72 MIR6726 MIR429 B3GALT6 CPTP TTLL10-AS1 SDF4 TNFRSF18 UBE2J2 TTLL10 ATAD3C TAS1R3 ATAD3A MIB2 PUSL1 MIR6808 CDK11B LINC01342 MXRA8 TNFRSF4 FNDC10 CPSF3L MRPL20 MMP23B DVL1 MIR6727 CCNL2 MIR200A TMEM88B ANKRD65 ATAD3B AURKAIP1
nsv1011818 Chr.1:1394332 - 1575421 on Build GRCh38 Gain VWA1 TMEM240 LOC107985729 LOC148413 LOC102724312 SSU72 MRPL20 CCNL2 TMEM88B ATAD3C ANKRD65 ATAD3B ATAD3A
esv2758913 Chr.1:1389149 - 2092899 on Build GRCh38 Gain+Loss VWA1 TMEM240 LOC107985729 LOC105378591 LOC148413 LOC102724312 SSU72 CDK11A TMEM52 GABRD MMP23A ATAD3C LOC105378589 ATAD3A SLC35E2B MIB2 CFAP74 SLC35E2 CALML6 NADK PRKCZ CDK11B LOC105378949 FNDC10 MRPL20 MMP23B CCNL2 TMEM88B ANKRD65 ATAD3B GNB1

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More Information


Set Membership:

 Intragenic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

protein phosphatase

Gene Ontology Categories:

Function(s) Process(es)


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