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See other CASKIN1 CNV Assays ›
Gene Symbol
CASKIN1
Assay Reference Genome
Location

Chr.16:2179862 on build GRCh38
Cytoband
16p13.3
Assay ID Hs00161302_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 57524

Gene Name:

 CASK interacting protein 1

Gene Aliases:

 ANKS5A

Location:

 Chr.16:2177183-2196464 on Build GRCh38

Assay Gene Location:

 Within Exon 18
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
CASKIN1 NM_020764.3 18 3538 NP_065815.1
AB037727.1 10 2675 BAA92544.1
AF451977.1 18 3604 AAL49758.1
BC042011.1 AAH42011.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication GFER PGP NTN3 TMEM204 SNHG19 RGS11 PRR35 RPUSD1 CEMP1 TPSB2 LOC105371047 SNHG9 LOC106660606 NME3 MIR6511B1 NPRL3 PRR25 MIR4516 WASIR2 NPW MIR4717 C16orf91 MLST8 METTL26 MIR5587 MIR6768 FAM173A HBM MRPL28 NME4 TPSD1 METRN CLCN7 LOC100134368 LUC7L JMJD8 TRAF7 HS3ST6 FLJ42627 RNPS1 TBC1D24 FBXL16 MSLN CCDC78 ABCA3 RPL23AP5 HBA2 TMEM8A SNORA64 ERVK13-1 BRICD5 ATP6V0C CCDC154 MIR6859-4 CCNF C16orf59 FAM234A CASKIN1 TPSG1 TSR3 RPS2 LOC729652 ABCA17P LOC652276 IGFALS RHBDF1 NTHL1 TSC2 RNF151 NHLRC4 LINC00235 ARHGDIG SOX8 MRPS34 BAIAP3 SSTR5-AS1 PKD1 GNG13 MIR3177 TPSAB1 CRAMP1 MSRB1 SPSB3 HBZ PRSS29P EME2 MIR1225 SNORA78 PDPK1 CAPN15 CHTF18 MIR940 HAGH TELO2 WDR24 MIR3677 DNASE1L2 RAB11FIP3 HN1L NDUFB10 CACNA1H MCRIP2 SYNGR3 FAHD1 LOC105371045 MPG NARFL ECI1 RAB26 SNRNP25 DDX11L10 HBA1 KCTD5 RAB40C GNPTG LOC107987233 LOC105371049 HBQ1 C1QTNF8 AXIN1 PTX4 RHOT2 LOC105371046 SNORD60 RPL3L TBL3 AMDHD2 ZNF598 POLR3K PIGQ LOC101929280 STUB1 UNKL SNORA10 LINC00254 LOC107984876 PRSS27 HAGHL LOC105371038 WDR90 NOXO1 NUBP2 PDIA2 LOC105371184 MIR3176 MIR662 E4F1 MIR6767 MEIOB WFIKKN1 LMF1 MIR3178 MIR3180-5 UBE2I LOC100287175 MAPK8IP3 SSTR5 DECR2 LMF1-AS1 RHBDL1 SLC9A3R2 IFT140
dgv4859n54 Chr.16:1971892 - 2264400 on Build GRCh38 Loss GFER PGP LOC105371049 SNHG19 PKD1 TRAF7 SNORD60 RNPS1 TBL3 MIR1225 ZNF598 MIR6511B1 BRICD5 NOXO1 DNASE1L2 MIR4516 NPW SYNGR3 E4F1 CASKIN1 MLST8 MIR3180-5 ECI1 NTHL1 TSC2 RAB26 SLC9A3R2
dgv4861n54 Chr.16:2083900 - 2246850 on Build GRCh38 Loss DNASE1L2 PGP LOC105371049 SNHG19 MIR4516 PKD1 TRAF7 E4F1 SNORD60 CASKIN1 MIR1225 MLST8 MIR3180-5 ECI1 TSC2 RAB26 MIR6511B1 BRICD5
dgv4863n54 Chr.16:2141733 - 2274302 on Build GRCh38 Loss MIR3677 DNASE1L2 PGP SNHG19 TRAF7 E4F1 SNORD60 RNPS1 CASKIN1 MLST8 MIR940 ECI1 RAB26 LOC106660606 BRICD5
nsv571190 Chr.16:2055054 - 2200730 on Build GRCh38 Loss LOC105371049 MIR3180-5 SNHG19 MIR4516 PKD1 TRAF7 TSC2 RAB26 SNORD60 MIR6511B1 CASKIN1 MIR1225
dgv456n67 Chr.16:2175295 - 2181915 on Build GRCh38 Gain TRAF7 CASKIN1
nsv1052260 Chr.16:2074546 - 2629655 on Build GRCh38 Gain PGP LOC105371049 NTN3 SNHG19 PKD1 TRAF7 SNORD60 RNPS1 AMDHD2 TBC1D24 MIR1225 PDPK1 CEMP1 ABCA3 MIR940 LOC106660606 MIR6511B1 BRICD5 ATP6V0C MIR3677 DNASE1L2 CCNF MIR4516 C16orf59 MIR4717 E4F1 CASKIN1 MLST8 LOC729652 MIR6767 MIR6768 ABCA17P LOC652276 MIR3178 MIR3180-5 ECI1 TSC2 RAB26
nsv457351 Chr.16:2156590 - 2274302 on Build GRCh38 Loss MLST8 MIR3677 DNASE1L2 PGP MIR940 TRAF7 ECI1 LOC106660606 E4F1 RNPS1 CASKIN1 BRICD5
nsv952902 Chr.16:2143400 - 2339999 on Build GRCh38 Deletion MIR3677 DNASE1L2 PGP SNHG19 TRAF7 MIR4717 E4F1 SNORD60 RNPS1 CASKIN1 MLST8 ABCA3 MIR940 ECI1 RAB26 LOC106660606 BRICD5

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More Information


Set Membership:

 Intragenic Exonic DGV Variation

Panther Classification:

Molecular Function -

scaffold/adaptor protein

Gene Ontology Categories:

Function(s) Process(es)


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