Hs00183887_cn

• Gene Symbol: LOC339059
• Assay Reference Genome Location: Chr.16:88743093 on build GRCh38
• Cytoband: 16q24.3

Target Gene Details

• Entrez Gene ID: 339059
• Gene Name: uncharacterized LOC339059
• Gene Aliases: -
• Location: Chr.16:88742767-88745748 on Build GRCh38
• Assay Gene Location: Within Exon 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
LOC339059	NR_120387.1	1	327
	AK097767.1	1	327	BAC05165.1
	BC111769.1	1	273	AAI11770.1

Target Gene Details

• Entrez Gene ID: 9780
• Gene Name: piezo type mechanosensitive ion channel component 1
• Gene Aliases: DHS, FAM38A, LMPH3, Mib
• Location: Chr.16:88715338-88785220 on Build GRCh38
• Assay Gene Location: Within Intron 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PIEZO1	NM_001142864.3			NP_001136336.2
	HY165228.1
	KC602455.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv1063024	Chr.16:88707330 - 89238482 on Build GRCh38	Gain	TRAPPC2L PABPN1L CDH15 LOC100289580 LOC101927793 CTU2 LOC400558 LOC100129697 LOC105371409 LOC107987238 LOC339059 CDT1 ACSF3 PIEZO1 ZNF778 CBFA2T3 GALNS LINC00304 MIR4722 APRT SLC22A31
nsv471113	Chr.16:88650665 - 88764428 on Build GRCh38	Loss	LOC339059 MVD CYBA LOC100289580 CTU2 PIEZO1 SNAI3 MIR4722 SNAI3-AS1 RNF166
dgv3064n100	Chr.16:88683753 - 88846491 on Build GRCh38	Gain	LOC107987238 LOC339059 CDT1 LOC100289580 CTU2 PIEZO1 SNAI3 GALNS MIR4722 APRT SNAI3-AS1 RNF166
nsv517643	Chr.16:88713767 - 88756339 on Build GRCh38	Loss	LOC339059 LOC100289580 CTU2 PIEZO1 MIR4722
nsv833327	Chr.16:88667431 - 88757621 on Build GRCh38	Loss	LOC339059 LOC100289580 CTU2 PIEZO1 SNAI3 MIR4722 SNAI3-AS1 RNF166
nsv573674	Chr.16:88738775 - 89325907 on Build GRCh38	Gain	TRAPPC2L PABPN1L CDH15 LOC100289580 LOC101927793 ANKRD11 LOC400558 LOC105371414 LOC100129697 LOC105371409 LOC100287036 LOC107987238 LOC339059 CDT1 ACSF3 PIEZO1 ZNF778 CBFA2T3 GALNS LINC00304 APRT SLC22A31
nsv482951	Chr.16:88633593 - 90228345 on Build GRCh38	Loss	PABPN1L CDH15 CPNE7 ANKRD11 VPS9D1-AS1 SPATA33 LOC100129697 DBNDD1 URAHP LOC107987238 FAM157C CBFA2T3 APRT SNAI3-AS1 AFG3L1P GAS8-AS1 CTU2 LOC400558 LOC105371409 RNF166 VPS9D1 LOC339059 TCF25 CYBA ACSF3 TUBB3 IL17C LOC105371419 ZNF778 GALNS MC1R GAS8 TRAPPC2L CENPBD1 LOC100289580 LOC101927793 SNAI3 CHMP1A LOC100287036 CDT1 SNORD68 PIEZO1 LINC00304 DEF8 SLC22A31 DPEP1 MVD CDK10 PRDM7 RPL13 LOC105371414 LOC101927817 FANCA ZNF276 SPIRE2 TUBB8P7 LOC107984817 MIR4722 SPATA2L SPG7
nsv1927	Chr.16:88712585 - 88743583 on Build GRCh38	Insertion	LOC339059 LOC100289580 CTU2 PIEZO1 MIR4722
nsv471114	Chr.16:88688461 - 88756339 on Build GRCh38	Gain	LOC339059 LOC100289580 CTU2 PIEZO1 MIR4722 RNF166
nsv952070	Chr.16:88257295 - 88780192 on Build GRCh38	Deletion	MVD LOC100289580 MIR5189 CTU2 ZFPM1 SNAI3 ZNF469 RNF166 ZC3H18-AS1 LOC339059 CYBA IL17C ZC3H18 PIEZO1 LOC107984862 MIR4722 SNAI3-AS1
nsv1160442	Chr.16:88708161 - 88778524 on Build GRCh38	Deletion	LOC339059 LOC100289580 CTU2 PIEZO1 MIR4722
nsv1061256	Chr.16:88711587 - 89013365 on Build GRCh38	Gain	TRAPPC2L PABPN1L LOC100289580 LOC101927793 CTU2 LOC100129697 LOC105371409 LOC107987238 LOC339059 CDT1 PIEZO1 CBFA2T3 GALNS MIR4722 APRT
nsv573675	Chr.16:88740797 - 88743485 on Build GRCh38	Loss	LOC339059 LOC100289580 PIEZO1

More Information

• Set Membership: Intragenic, Exonic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

cation transport
positive regulation of integrin activation
positive regulation of cell-cell adhesion mediated by integrin
cation transmembrane transport

Function(s)

cation channel activity
mechanically-gated ion channel activity