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See other SHMT2 CNV Assays ›
Gene Symbol
SHMT2
Assay Reference Genome
Location

Chr.12:57231869 on build GRCh38
Cytoband
12q13.3
Assay ID Hs00194916_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 6472

Gene Name:

 serine hydroxymethyltransferase 2

Gene Aliases:

 GLYA, HEL-S-51e, SHMT

Location:

 Chr.12:57229573-57234935 on Build GRCh38

Assay Gene Location:

 Overlaps Exon 6 - Intron 6
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SHMT2 NM_001166356.1 NP_001159828.1
NM_001166357.1 NP_001159829.1
NM_001166358.1 NP_001159830.1
NM_001166359.1 NP_001159831.1
NM_005412.5 NP_005403.2
NR_029415.1
NR_029416.1
NR_029417.1
NR_048562.1
XM_011538675.2 XP_011536977.1
XM_011538676.2 XP_011536978.1
XM_011538677.2 XP_011536979.1
XM_011538678.2 XP_011536980.1
AK055053.1
AK223555.1 BAD97275.1
AK295941.1
AK296183.1
AK297173.1
AK298231.1
AK301339.1
AK301443.1
AK303827.1
AK315916.1
BC011911.2 AAH11911.1
BC013677.2 AAH13677.1
BC032584.1 AAH32584.1
BC044211.1 AAH44211.1
BC091501.1 AAH91501.1
BT006866.1 AAP35512.1
BX647711.1 CAI46021.1
BX648847.1
CN395976.1
DC386590.1
EU668344.1
KU178333.1
KU178334.1
L11932.1 AAA63258.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv482992 Chr.12:56206217 - 57706217 on Build GRCh38 Gain+Loss MIR616 INHBE PIP4K2C OS9 PRIM1 LRP1-AS PTGES3 SDR9C7 NXPH4 STAT6 MIR1228 SLC39A5 ARHGEF25 NACA NDUFA4L2 RNF41 TIMELESS STAT2 STAC3 COQ10A IL23A SNORD59A KIF5A ARHGAP9 MIR6758 ANKRD52 SHMT2 LOC101927583 CNPY2 SNORD59B BAZ2A RDH16 ZBTB39 INHBC GLS2 NABP2 SPRYD4 HBCBP DCTN2 SNORA105C DTX3 R3HDM2 NAB2 DDIT3 CS TAC3 B4GALNT1 MBD6 MYO1A LRP1 APOF HSD17B6 ATP5B SLC26A10 RBMS2 NEMP1 MIP PAN2 GLI1 MARS GPR182
nsv519293 Chr.12:57189889 - 57243810 on Build GRCh38 Loss STAC3 NXPH4 MIR1228 NDUFA4L2 SHMT2 LRP1
nsv952189 Chr.12:57127118 - 57245617 on Build GRCh38 Deletion STAC3 NXPH4 MIR1228 NDUFA4L2 SHMT2 LRP1 LRP1-AS
dgv96n21 Chr.12:57139199 - 57243810 on Build GRCh38 Loss STAC3 NXPH4 MIR1228 NDUFA4L2 SHMT2 LRP1 LRP1-AS

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