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See other SSU72 CNV Assays ›
Gene Symbol
SSU72
Assay Reference Genome
Location

Chr.1:1544877 on build GRCh38
Cytoband
1p36.33
Assay ID Hs00199126_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 29101

Gene Name:

 SSU72 homolog, RNA polymerase II CTD phosphatase

Gene Aliases:

 HSPC182, PNAS-120

Location:

 Chr.1:1541673-1574882 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 3 - Exon 3
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SSU72 NM_014188.2 NP_054907.1
AF161530.1 AAF29145.1
AF277178.1 AAK07538.1
AJ276409.1 CAC81713.1
AK001809.1 BAA91921.1
AK127149.1
AK297505.1
AK310067.1
BC008070.2 AAH08070.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv545000 Chr.1:1421170 - 1573654 on Build GRCh38 Loss VWA1 SSU72 TMEM240 LOC102724312 ANKRD65 LOC107985729 TMEM88B ATAD3A ATAD3B ATAD3C
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss LOC148413 SLC35E2B LOC107985728 LOC107985729 FAM132A MIR200B MRPL20 NADK TNFRSF4 MMP23A ATAD3C TNFRSF18 PLEKHN1 SCNN1D SLC35E2 SSU72 B3GALT6 NOC2L MIB2 CPSF3L AGRN LOC102724312 LINC01128 LINC01342 CDK11A HES4 MIR6808 KLHL17 RNF223 MIR6727 VWA1 MIR200A MXRA8 TAS1R3 UBE2J2 TMEM88B LOC284600 TTLL10-AS1 TTLL10 ATAD3B MIR6726 SAMD11 ACAP3 LOC100287934 LOC105378948 FNDC10 LOC100130417 ISG15 CCNL2 MIR429 LOC100288069 CPTP FAM41C DVL1 CDK11B AURKAIP1 FAM87B ANKRD65 LOC100288175 C1orf159 MMP23B TMEM240 SDF4 PERM1 ATAD3A LINC00115 PUSL1
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss LOC107985729 MIR200B CALML6 MRPL20 TNFRSF4 MMP23A MIR6859-1 TNFRSF18 PLEKHN1 SCNN1D SLC35E2 SSU72 LOC101928626 MIB2 CPSF3L AGRN LOC102724312 LINC01128 LINC01342 CFAP74 CDK11A MTND1P23 MIR6808 RNF223 LOC105378592 VWA1 MIR200A MXRA8 TAS1R3 TMEM88B TTLL10-AS1 MIR6723 TTLL10 LOC100134822 MIR6726 OR4F29 GABRD LOC105378948 MORN1 FNDC10 LOC100288069 TMEM52 FAM41C CDK11B FAM87B OR4F16 FAM138A MIR1302-2 DDX11L1 TMEM240 SDF4 PERM1 LOC100506504 ATAD3A LINC00115 LOC148413 SLC35E2B LOC107985728 FAM132A NADK ATAD3C LOC100129534 B3GALT6 NOC2L LOC100132287 LOC100133331 LOC105378947 LOC102725121 MIR6859-2 HES4 KLHL17 MIR6727 LOC105378589 LOC729737 UBE2J2 LOC284600 ATAD3B WASH7P SAMD11 ACAP3 LOC100287934 LOC100130417 ISG15 CCNL2 MIR429 LOC105378591 CPTP DVL1 MTND2P28 AURKAIP1 OR4F5 GNB1 ANKRD65 LOC100288175 LOC105378949 C1orf159 SKI MMP23B PRKCZ LOC107984841 FAAP20 PUSL1
nsv950452 Chr.1:1106921 - 1637538 on Build GRCh38 Deletion LOC148413 MIR6726 ACAP3 LOC107985729 FAM132A MIR200B FNDC10 MRPL20 TNFRSF4 CCNL2 ATAD3C TNFRSF18 SCNN1D MIR429 SSU72 CPTP B3GALT6 DVL1 CDK11B AURKAIP1 MIB2 CPSF3L LOC102724312 ANKRD65 LINC01342 C1orf159 MMP23B MIR6808 MIR6727 VWA1 MIR200A TMEM240 SDF4 MXRA8 TAS1R3 UBE2J2 TMEM88B ATAD3A TTLL10-AS1 TTLL10 ATAD3B PUSL1
nsv1011818 Chr.1:1394332 - 1575421 on Build GRCh38 Gain LOC148413 LOC102724312 ANKRD65 LOC107985729 MRPL20 CCNL2 ATAD3C VWA1 SSU72 TMEM240 TMEM88B ATAD3A ATAD3B
esv2758913 Chr.1:1389149 - 2092899 on Build GRCh38 Gain+Loss LOC148413 SLC35E2B GABRD LOC107985729 CALML6 FNDC10 MRPL20 NADK MMP23A CCNL2 ATAD3C LOC105378591 SLC35E2 SSU72 TMEM52 CDK11B MIB2 GNB1 LOC102724312 ANKRD65 LOC105378949 MMP23B CFAP74 CDK11A PRKCZ VWA1 TMEM240 LOC105378589 TMEM88B ATAD3A ATAD3B

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More Information


Set Membership:

 Intragenic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

protein phosphatase

Gene Ontology Categories:

Function(s) Process(es)


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