Hs00206222_cn

• Gene Symbol: NUBP2
• Assay Reference Genome Location: Chr.16:1786544 on build GRCh38
• Cytoband: 16p13.3

Target Gene Details

• Entrez Gene ID: 10101
• Gene Name: nucleotide binding protein 2
• Gene Aliases: CFD1, NBP 2, NUBP1
• Location: Chr.16:1782923-1789191 on Build GRCh38
• Assay Gene Location: Overlaps Intron 4 - Exon 5

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
NUBP2	NM_001284501.1			NP_001271430.1
	NM_001284502.1			NP_001271431.1
	NM_012225.3			NP_036357.1
	NR_104318.1
	XM_005255027.2			XP_005255084.1
	XM_005255030.1			XP_005255087.1
	XM_011522338.2			XP_011520640.1
	XM_017022831.1			XP_016878320.1
	XM_017022832.1			XP_016878321.1
	AF118394.1			AAD45242.1
	AK001023.1			BAA91471.1
	AK093593.1
	AK124460.1	1	1834
	AK300696.1
	AK315611.1
	BC002768.2			AAH02768.1
	BC008005.1			AAH08005.1
	BI196883.1
	BU189242.1
	BX446436.2
	BX648907.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv457335	Chr.16:1729694 - 1789022 on Build GRCh38	Loss	SPSB3 NUBP2 EME2 NME3 MAPK8IP3 MRPS34 MIR3177
esv2422427	Chr.16:10001 - 2723164 on Build GRCh38	Duplication	TPSB2 LMF1-AS1 DDX11L10 SNHG9 MPG RGS11 CHTF18 MEIOB SNORA64 PTX4 NPRL3 MIR3178 WDR24 LOC105371038 GFER KCTD5 MSRB1 CAPN15 RPL3L DECR2 SYNGR3 LOC105371049 NUBP2 NME3 HS3ST6 GNG13 NHLRC4 TMEM8A C1QTNF8 MIR940 MIR3177 MLST8 TPSAB1 CRAMP1 SSTR5-AS1 ARHGDIG UNKL PRSS29P ABCA3 TELO2 MAPK8IP3 POLR3K LINC00254 RPL23AP5 CLCN7 SLC9A3R2 JMJD8 CEMP1 SSTR5 SNORD60 MIR6767 HBM BAIAP3 FAHD1 CCNF MIR4516 HBA1 PDPK1 RAB40C C16orf91 C16orf59 MIR6511B1 RHOT2 RHBDL1 LUC7L LINC00235 MRPS34 TPSG1 PRR35 MIR1225 RPS2 FAM234A METTL26 NTN3 TBC1D24 CASKIN1 PRR25 ERVK13-1 LOC100134368 LOC729652 MIR4717 LOC105371047 MIR6768 PKD1 LOC105371046 MIR3677 NTHL1 TBL3 ABCA17P NDUFB10 MIR3176 SNORA10 RAB11FIP3 TMEM204 NPW LOC107984876 RHBDF1 MCRIP2 SNHG19 IGFALS IFT140 MIR662 WASIR2 AMDHD2 RPUSD1 LOC652276 EME2 NME4 LOC100287175 DNASE1L2 CACNA1H PGP WDR90 HBZ SPSB3 TSR3 NARFL MIR5587 SOX8 BRICD5 WFIKKN1 HBQ1 LOC106660606 METRN HN1L FBXL16 RNF151 HAGHL CCDC154 SNRNP25 TSC2 GNPTG CCDC78 MIR6859-4 HBA2 ATP6V0C LMF1 MSLN MIR3180-5 PRSS27 ZNF598 NOXO1 RAB26 LOC107987233 PDIA2 HAGH LOC105371184 LOC101929280 RNPS1 ECI1 AXIN1 STUB1 UBE2I SNORA78 TRAF7 PIGQ LOC105371045 MRPL28 FLJ42627 E4F1 TPSD1 FAM173A
nsv571172	Chr.16:1764390 - 1817039 on Build GRCh38	Loss	SPSB3 NUBP2 EME2 NME3 MAPK8IP3 MRPS34 HAGH IGFALS
nsv1160328	Chr.16:1704619 - 1797867 on Build GRCh38	Deletion	SPSB3 NUBP2 EME2 NME3 MAPK8IP3 MRPS34 MIR3177 IGFALS
nsv571171	Chr.16:1757779 - 1804539 on Build GRCh38	Gain+Loss	SPSB3 NUBP2 EME2 NME3 MAPK8IP3 MRPS34 IGFALS
nsv1042986	Chr.16:1784723 - 1866102 on Build GRCh38	Loss	FAHD1 NUBP2 MEIOB HAGH IGFALS
dgv4856n54	Chr.16:1600945 - 1813519 on Build GRCh38	Loss	NUBP2 EME2 NME3 MIR3177 CRAMP1 SPSB3 MAPK8IP3 MRPS34 LOC105371046 HAGH HN1L IGFALS IFT140
nsv471069	Chr.16:1754356 - 1791032 on Build GRCh38	Loss	SPSB3 NUBP2 EME2 NME3 MAPK8IP3 MRPS34 IGFALS
nsv1051692	Chr.16:1505070 - 1866102 on Build GRCh38	Loss	FAHD1 NUBP2 EME2 NME3 MEIOB MIR3177 LOC105371047 CRAMP1 SPSB3 TELO2 TMEM204 MAPK8IP3 MRPS34 LOC105371046 HAGH HN1L IGFALS IFT140
nsv827500	Chr.16:1761258 - 1795126 on Build GRCh38	Gain	SPSB3 NUBP2 EME2 NME3 MAPK8IP3 MRPS34 IGFALS
nsv518641	Chr.16:1645775 - 1835631 on Build GRCh38	Loss	FAHD1 NUBP2 EME2 NME3 MEIOB MIR3177 CRAMP1 SPSB3 MAPK8IP3 MRPS34 HAGH HN1L IGFALS
nsv952900	Chr.16:1724500 - 1827999 on Build GRCh38	Deletion	SPSB3 FAHD1 NUBP2 EME2 NME3 MAPK8IP3 MRPS34 HAGH MIR3177 IGFALS
nsv571170	Chr.16:1752231 - 1791032 on Build GRCh38	Loss	SPSB3 NUBP2 EME2 NME3 MAPK8IP3 MRPS34 IGFALS

More Information

• Set Membership: Intragenic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

iron-sulfur cluster assembly
cell projection organization

Function(s)

nucleotide binding
protein binding
ATP binding
metal ion binding
4 iron, 4 sulfur cluster binding