Hs00206222_cn

• Gene Symbol: NUBP2
• Assay Reference Genome Location: Chr.16:1786544 on build GRCh38
• Cytoband: 16p13.3

Target Gene Details

• Entrez Gene ID: 10101
• Gene Name: nucleotide binding protein 2
• Gene Aliases: CFD1, NBP 2, NUBP1
• Location: Chr.16:1782923-1789191 on Build GRCh38
• Assay Gene Location: Overlaps Intron 4 - Exon 5

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
NUBP2	NM_001284501.1			NP_001271430.1
	NM_001284502.1			NP_001271431.1
	NM_012225.3			NP_036357.1
	NR_104318.1
	XM_005255027.2			XP_005255084.1
	XM_005255030.1			XP_005255087.1
	XM_011522338.2			XP_011520640.1
	XM_017022831.1			XP_016878320.1
	XM_017022832.1			XP_016878321.1
	AF118394.1			AAD45242.1
	AK001023.1			BAA91471.1
	AK093593.1
	AK124460.1	1	1834
	AK300696.1
	AK315611.1
	BC002768.2			AAH02768.1
	BC008005.1			AAH08005.1
	BI196883.1
	BU189242.1
	BX446436.2
	BX648907.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv571169	Chr.16:1729694 - 1789022 on Build GRCh38	Loss	SPSB3 MRPS34 NME3 MIR3177 MAPK8IP3 NUBP2 EME2
esv2422427	Chr.16:10001 - 2723164 on Build GRCh38	Duplication	LOC105371049 DDX11L10 LOC652276 POLR3K SNHG19 PIGQ GFER MIR3177 SNORA64 NUBP2 LMF1 TELO2 NDUFB10 WDR24 C16orf59 MPG HS3ST6 SOX8 STUB1 HBA2 RPUSD1 NME4 MIR940 CLCN7 C1QTNF8 CCNF MSRB1 NOXO1 METRN MIR6859-4 MRPS34 CCDC78 FAM173A MEIOB RAB40C LOC100134368 SSTR5-AS1 MLST8 C16orf91 LOC729652 TPSB2 JMJD8 LOC105371184 SNORA10 BAIAP3 LOC107987233 CCDC154 RNF151 CACNA1H DNASE1L2 ABCA3 TSR3 MIR3176 LOC100287175 FAM234A MIR1225 RPL23AP5 SNHG9 PTX4 LOC105371046 LMF1-AS1 HBZ HBA1 ARHGDIG LINC00254 PKD1 NME3 CRAMP1 HN1L LOC105371045 NTHL1 GNPTG RGS11 LOC101929280 MIR3178 E4F1 LOC106660606 RHOT2 ATP6V0C IFT140 NPW LUC7L ABCA17P WASIR2 MIR3677 LOC105371047 WDR90 MIR6768 MIR662 IGFALS FLJ42627 SLC9A3R2 CAPN15 CHTF18 TPSG1 HBQ1 HAGH METTL26 RNPS1 HBM UNKL NTN3 RPL3L CEMP1 TBL3 SPSB3 RAB26 TPSAB1 PDIA2 ZNF598 HAGHL RHBDF1 NPRL3 NHLRC4 MAPK8IP3 TPSD1 SNRNP25 MIR6767 LINC00235 TMEM204 RHBDL1 RPS2 MIR6511B1 MSLN MIR5587 FBXL16 TRAF7 PRR35 NARFL MCRIP2 WFIKKN1 PRSS27 UBE2I GNG13 PRR25 RAB11FIP3 BRICD5 AXIN1 AMDHD2 SNORA78 CASKIN1 PRSS29P EME2 LOC107984876 LOC105371038 PDPK1 SYNGR3 MRPL28 MIR4717 KCTD5 MIR3180-5 TBC1D24 DECR2 PGP MIR4516 ECI1 SNORD60 TMEM8A TSC2 FAHD1 ERVK13-1 SSTR5
nsv571172	Chr.16:1764390 - 1817039 on Build GRCh38	Loss	SPSB3 MRPS34 HAGH NME3 MAPK8IP3 NUBP2 IGFALS EME2
nsv1160328	Chr.16:1704619 - 1797867 on Build GRCh38	Deletion	SPSB3 MRPS34 NME3 MIR3177 MAPK8IP3 NUBP2 IGFALS EME2
nsv571171	Chr.16:1757779 - 1804539 on Build GRCh38	Gain+Loss	SPSB3 MRPS34 NME3 MAPK8IP3 NUBP2 IGFALS EME2
nsv1042986	Chr.16:1784723 - 1866102 on Build GRCh38	Loss	HAGH MEIOB NUBP2 FAHD1 IGFALS
dgv4856n54	Chr.16:1600945 - 1813519 on Build GRCh38	Loss	SPSB3 IFT140 NME3 MIR3177 MAPK8IP3 NUBP2 CRAMP1 IGFALS HN1L MRPS34 HAGH EME2 LOC105371046
nsv471069	Chr.16:1754356 - 1791032 on Build GRCh38	Loss	SPSB3 MRPS34 NME3 MAPK8IP3 NUBP2 IGFALS EME2
nsv1051692	Chr.16:1505070 - 1866102 on Build GRCh38	Loss	SPSB3 IFT140 NME3 LOC105371047 MIR3177 MAPK8IP3 NUBP2 CRAMP1 IGFALS HN1L TMEM204 TELO2 MRPS34 HAGH MEIOB FAHD1 EME2 LOC105371046
nsv827500	Chr.16:1761258 - 1795126 on Build GRCh38	Gain	SPSB3 MRPS34 NME3 MAPK8IP3 NUBP2 IGFALS EME2
nsv518641	Chr.16:1645775 - 1835631 on Build GRCh38	Loss	SPSB3 NME3 MIR3177 MAPK8IP3 NUBP2 CRAMP1 IGFALS HN1L MRPS34 HAGH MEIOB FAHD1 EME2
nsv457336	Chr.16:1752231 - 1791032 on Build GRCh38	Loss	SPSB3 MRPS34 NME3 MAPK8IP3 NUBP2 IGFALS EME2
nsv952900	Chr.16:1724500 - 1827999 on Build GRCh38	Deletion	SPSB3 MRPS34 HAGH NME3 MIR3177 MAPK8IP3 NUBP2 FAHD1 IGFALS EME2

More Information

• Set Membership: Intragenic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

iron-sulfur cluster assembly
cell projection organization

Function(s)

nucleotide binding
protein binding
ATP binding
metal ion binding
4 iron, 4 sulfur cluster binding