Hs00206756_cn

• Gene Symbol: APOD
• Assay Reference Genome Location: Chr.3:195573995 on build GRCh38
• Cytoband: 3q29

Target Gene Details

• Entrez Gene ID: 347
• Gene Name: apolipoprotein D
• Gene Aliases: -
• Location: Chr.3:195568702-195584205 on Build GRCh38
• Assay Gene Location: Overlaps Intron 2 - Exon 3

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
APOD	NM_001647.3			NP_001638.1
	AK294523.1
	AK312090.1
	BC007402.2			AAH07402.1
	BQ008672.1
	BT019860.1			AAV38663.1
	BT019861.1			AAV38664.1
	BU195270.1
	CR456838.1			CAG33119.1
	CR541773.1			CAG46572.1
	DA892855.1
	J02611.1			AAB59517.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv5016n100	Chr.3:195552380 - 195720039 on Build GRCh38	Gain+Loss	SDHAP2 APOD LOC105374297 LINC00969 MIR570
nsv1001387	Chr.3:195465410 - 195934667 on Build GRCh38	Gain	PPP1R2 LOC101929697 SDHAP2 MUC4 APOD MUC20 TNK2 LOC105374297 LINC00969 MIR570 MIR6829 LOC105374299
dgv5015n100	Chr.3:195532487 - 195751823 on Build GRCh38	Loss	PPP1R2 SDHAP2 MUC4 APOD MUC20 LOC105374297 LINC00969 MIR570
nsv1006229	Chr.3:195350692 - 195747880 on Build GRCh38	Gain	ACAP2 PPP1R2 SDHAP2 MUC4 APOD MUC20 LOC105374297 LINC00969 MIR570
nsv428430	Chr.3:195478549 - 196102555 on Build GRCh38	Gain+Loss	LOC101929697 SDHAP2 MUC4 APOD MUC20 LINC00969 MIR570 MIR6829 SDHAP1 TFRC LOC105374301 PPP1R2 TNK2 LOC105374297 LOC105374299
esv2763776	Chr.3:195514028 - 195775248 on Build GRCh38	Gain+Loss	PPP1R2 SDHAP2 MUC4 APOD MUC20 LOC105374297 LINC00969 MIR570
dgv5014n100	Chr.3:195514016 - 195747880 on Build GRCh38	Gain	PPP1R2 SDHAP2 MUC4 APOD MUC20 LOC105374297 LINC00969 MIR570
esv2759213	Chr.3:195382058 - 196344722 on Build GRCh38	Gain+Loss	TCTEX1D2 LOC101929697 SDHAP2 MUC4 APOD TM4SF19-AS1 MUC20 TM4SF19-TCTEX1D2 LINC00969 MIR570 MIR6829 ZDHHC19 SDHAP1 TFRC LOC105374301 TM4SF19 ACAP2 LINC00885 PPP1R2 SLC51A TNK2 LOC105374297 PCYT1A LOC105374299

More Information

• Set Membership: Intragenic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

apolipoprotein

Gene Ontology Categories:

Process(es)

response to reactive oxygen species
angiogenesis
glucose metabolic process
lipid metabolic process
lipid transport
brain development
aging
negative regulation of platelet-derived growth factor receptor signaling pathway
peripheral nervous system axon regeneration
tissue regeneration
negative regulation of protein import into nucleus
response to drug
negative regulation of smooth muscle cell proliferation
response to axon injury
negative regulation of focal adhesion assembly
negative regulation of lipoprotein lipid oxidation
negative regulation of monocyte chemotactic protein-1 production
negative regulation of cytokine production involved in inflammatory response
negative regulation of smooth muscle cell-matrix adhesion
negative regulation of T cell migration

Function(s)

lipid transporter activity
protein binding
cholesterol binding